RDKit
Open-source cheminformatics and machine learning.
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Here is a list of all class members with links to the classes they belong to:
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- p -
p1 :
conrec::ConrecSegment
p2 :
conrec::ConrecSegment
p_symbol :
RDKit::Canon::bondholder
,
RDKit::Canon::canon_atom
padding :
RDKit::MolDrawOptions
PAINS :
RDKit::FilterCatalogParams
PAINS_A :
RDKit::FilterCatalogParams
PAINS_B :
RDKit::FilterCatalogParams
PAINS_C :
RDKit::FilterCatalogParams
Pair() :
RDKit::Dict::Pair
PairHolder() :
RDKit::PairHolder
PairList() :
RDKit::CIPLabeler::PairList
panelHeight() :
RDKit::MolDraw2D
panelWidth() :
RDKit::MolDraw2D
ParamCollection() :
ForceFields::UFF::ParamCollection
parameters() :
RDKit::FMCS::MaximumCommonSubgraph
params :
RDKit::RGroupDecompData
,
RDKit::RGroupDecomposition
ParamsVect :
RDKit::Descriptors::CrippenParamCollection
paramType_t :
RDCatalog::Catalog< entryType, paramType >
parent :
RDKit::MarvinMolBase
parentAtoms :
RDKit::MarvinMultipleSgroup
parentMolData :
RDKit::MolStandardize::PipelineResult
parity4() :
RDKit::CIPLabeler::Configuration
parseAtomsAndBonds() :
RDKit::MarvinMolBase
parseConformers :
RDKit::MolInterchange::JSONParseParameters
parseMoleculeSpecific() :
RDKit::MarvinDataSgroup
,
RDKit::MarvinGenericSgroup
,
RDKit::MarvinMolBase
,
RDKit::MarvinMonomerSgroup
,
RDKit::MarvinMulticenterSgroup
,
RDKit::MarvinMultipleSgroup
,
RDKit::MarvinSruCoModSgroup
,
RDKit::MarvinSuperatomSgroupExpanded
parseName :
RDKit::v1::SmartsParserParams
,
RDKit::v1::SmilesParserParams
,
RDKit::v2::SmilesParse::SmartsParserParams
,
RDKit::v2::SmilesParse::SmilesParserParams
parseParameters :
RDKit::v2::FileParsers::SmilesMolSupplierParams
,
RDKit::v2::FileParsers::TDTMolSupplierParams
parsePatterns() :
RDKit::StructureCheck::StructCheckerOptions
parseProperties :
RDKit::MolInterchange::JSONParseParameters
parseQueries :
RDKit::v2::CDXMLParser::CDXMLParserParams
parseRotatePatterns() :
RDKit::StructureCheck::StructCheckerOptions
parseStereoPatterns() :
RDKit::StructureCheck::StructCheckerOptions
parseTautomerData() :
RDKit::StructureCheck::StructCheckerOptions
parsingSCSRMol :
RDKit::v2::FileParsers::MolFileParserParams
partitionForLegend() :
RDKit::MolDraw2D_detail::DrawMol
PartitionSet() :
RDKit::RascalMCES::PartitionSet
passesFilter() :
RDKit::FPHolderBase
Path :
RDKit::StructureCheck::PathEntry
path14Configs :
ForceFields::CrystalFF::CrystalFFDetails
patternFingerprintQuery() :
RDKit::ExtendedQueryMol
,
RDKit::GeneralizedSubstruct::ExtendedQueryMol
patternFingerprintTarget() :
RDKit::TautomerQuery
patternFingerprintTemplate() :
RDKit::TautomerQuery
PatternHolder() :
RDKit::PatternHolder
Patterns :
RDKit::StructureCheck::StructCheckerOptions
pbci :
ForceFields::MMFF::MMFFPBCI
PDBRESIDUE :
RDKit::AtomMonomerInfo
PDBWriter() :
RDKit::PDBWriter
PeriodicTable() :
RDKit::PeriodicTable
permutation :
RDKit::CartesianProduct
,
RDKit::Chirality::StereoInfo
,
RDKit::RGroupDecompData
permutationCount :
RDKit::CartesianProduct
permuteBonds() :
RDDepict::EmbeddedFrag
permuteDeg4Nodes :
RDDepict::Compute2DCoordParameters
phiToEnergy :
ForceFields::CrystalFF::CrystalFFDetails
phiToGrad :
ForceFields::CrystalFF::CrystalFFDetails
pick() :
RDPickers::DistPicker
,
RDPickers::HierarchicalClusterPicker
,
RDPickers::LeaderPicker
,
RDPickers::MaxMinPicker
pickCanonical() :
RDKit::MolStandardize::TautomerEnumerator
pickleMol() :
RDKit::MolPickler
pickleReaction() :
RDKit::ReactionPickler
picks :
RDPickers::MaxMinPickInfo
pilp :
ForceFields::MMFF::MMFFProp
Pipeline() :
RDKit::MolStandardize::Pipeline
placement :
RDKit::MarvinDataSgroup
PlanarityContribs() :
ForceFields::CrystalFF::PlanarityContribs
PlanarityContribsParams() :
ForceFields::CrystalFF::PlanarityContribsParams
pluses :
RDKit::MarvinReaction
Point2D() :
Point2D
,
RDGeom::Point2D
,
RDKit::MolDraw2D_detail::Point2D
Point3D() :
RDGeom::Point3D
pointer :
DistGeom::ZMatrix::Iterator
,
RDKit::CXXAtomIterator< Graph, Vertex, Iterator, CheckedAtoms, CheckedBonds >::CXXAtomIter
,
RDKit::CXXBondIterator< Graph, Edge, Iterator, Checked >::CXXBondIter
,
RDKit::MolStandardize::TautomerEnumeratorResult::const_iterator
PointerTagMask :
RDKit::RDValue
PointND() :
RDGeom::PointND
points_ :
RDKit::MolDraw2D_detail::DrawShape
popLastVertex() :
RDKit::RascalMCES::PartitionSet
pos :
RDKit::CXXAtomIterator< Graph, Vertex, Iterator, CheckedAtoms, CheckedBonds >::CXXAtomIter
,
RDKit::CXXBondIterator< Graph, Edge, Iterator, Checked >::CXXBondIter
,
RDKit::GaussianShape::CustomFeature
,
RDKit::MolDraw2D_detail::SGroupDataLabel
pos_ :
RDKit::MolDraw2D_detail::DrawAnnotation
pos_type :
boost_adaptbx::python::streambuf
PositionConstraintContrib() :
ForceFields::PositionConstraintContrib
positioned :
RDKit::MolDraw2D_detail::SGroupDataLabel
positions :
ForceFields::CrystalFF::GaussianExpTorsionAngle
,
ForceFields::ForceField
PositionVariationOp() :
RDKit::MolEnumerator::PositionVariationOp
possibleHitsFile :
RDKit::SynthonSpaceSearch::SynthonSpaceSearchParams
postShapes_ :
RDKit::MolDraw2D_detail::DrawMol
power :
ForceFields::MMFF::MMFFVdWCollection
prbConf :
RDKit::MolAlign::O3AFuncData
prbProp :
RDKit::MolAlign::O3AFuncData
preallocate() :
RDKit::RingInfo
precision :
RDKit::MolWriterParams
,
RDKit::MrvWriterParams
preferOrganic :
RDKit::MolStandardize::CleanupParameters
prepareCore() :
RDKit::RGroupDecompositionParameters
prepareCores() :
RDKit::RGroupDecompData
prepareMatchWeightsVect() :
RDKit::MolAlign::SDM
prepareMolsBeforeDrawing :
RDKit::MolDrawOptions
prepSgroupsForRDKit() :
RDKit::MarvinMolBase
,
RDKit::MarvinReaction
preShapes_ :
RDKit::MolDraw2D_detail::DrawMol
prettyPrint :
RDKit::MrvWriterParams
previousMatchSize :
RDKit::RGroupDecompData
primary :
RDKit::Canon::AtomCompareCode
prioritize() :
RDKit::CIPLabeler::Sort
Priority() :
RDKit::CIPLabeler::Priority
probeRadius :
RDKit::Descriptors::DoubleCubicLatticeVolume
process() :
RDKit::RGroupDecompData
,
RDKit::RGroupDecomposition
processAndScore() :
RDKit::RGroupDecomposition
processedRlabels :
RDKit::RGroupDecompData
processOneMulticenterSgroup() :
RDKit::MarvinMulticenterSgroup
processSgroupsFromRDKit() :
RDKit::MarvinMolBase
processSpecialSgroups() :
RDKit::MarvinMolBase
,
RDKit::MarvinMulticenterSgroup
,
RDKit::MarvinMultipleSgroup
,
RDKit::MarvinSuperatomSgroup
products :
RDKit::MarvinReaction
ProgressBar() :
RDKit::ProgressBar
ProgressCallback :
RDKit::MCSParameters
ProgressCallbackUserData :
RDKit::MCSParameters
Properties() :
RDKit::Descriptors::Properties
propertyFlags :
RDKit::PNGMetadataParams
PropertyFunctor() :
RDKit::Descriptors::PropertyFunctor
propName :
RDKit::Descriptors::PropertyFunctor
propVersion :
RDKit::Descriptors::PropertyFunctor
proximityBonding :
RDKit::v1::PDBParserParams
,
RDKit::v2::FileParsers::PDBParserParams
prune() :
RDKit::RGroupDecompData
pruneBeforeFragmenting :
RDKit::ScaffoldNetwork::ScaffoldNetworkParams
prunedFingerprintVarianceScoreData :
RDKit::RGroupDecompData
pruneLength :
RDKit::RGroupDecompData
prunePermutations :
RDKit::RGroupDecompData
pruneRmsThresh :
RDKit::DGeomHelpers::EmbedParameters
pruneShapes() :
RDKit::GaussianShape::ShapeInput
pruneVertices() :
RDKit::RascalMCES::PartitionSet
ptrCast() :
RDKit::RDValue
push_back() :
RDKit::FMCS::SeedSet
pushOwnedAtom() :
RDKit::MarvinMol
,
RDKit::MarvinMolBase
pushOwnedBond() :
RDKit::MarvinMol
,
RDKit::MarvinMolBase
pushTieToStore() :
RDKit::RGroupScorer
PySequenceHolder() :
PySequenceHolder< T >
python_streambuf :
boost_adaptbx::python::streambuf_capsule
Generated on
for RDKit by
1.17.0