org.apache.commons.math3.ode

Class ParameterJacobianWrapper

java.lang.Object

org.apache.commons.math3.ode.ParameterJacobianWrapper

All Implemented Interfaces:

Parameterizable, ParameterJacobianProvider

 class ParameterJacobianWrapper
extends java.lang.Object
implements ParameterJacobianProvider

Wrapper class to compute Jacobian matrices by finite differences for ODE which do not compute them by themselves.

Since:

3.0

Field Summary

Fields

Modifier and Type	Field and Description
private FirstOrderDifferentialEquations	fode Main ODE set.
private java.util.Map<java.lang.String,java.lang.Double>	hParam Steps for finite difference computation of the Jacobian df/dp w.r.t.
private ParameterizedODE	pode Raw ODE without Jacobian computation skill to be wrapped into a ParameterJacobianProvider.

Constructor Summary

Constructors

Constructor and Description
ParameterJacobianWrapper(FirstOrderDifferentialEquations fode, ParameterizedODE pode, ParameterConfiguration[] paramsAndSteps) Wrap a ParameterizedODE into a ParameterJacobianProvider.

Method Summary

Methods

Modifier and Type	Method and Description
void	computeParameterJacobian(double t, double[] y, double[] yDot, java.lang.String paramName, double[] dFdP) Compute the Jacobian matrix of ODE with respect to one parameter.
java.util.Collection<java.lang.String>	getParametersNames() Get the names of the supported parameters.
boolean	isSupported(java.lang.String name) Check if a parameter is supported.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

fode

private final FirstOrderDifferentialEquations fode

Main ODE set.

pode

private final ParameterizedODE pode

Raw ODE without Jacobian computation skill to be wrapped into a ParameterJacobianProvider.

hParam

private final java.util.Map<java.lang.String,java.lang.Double> hParam

Steps for finite difference computation of the Jacobian df/dp w.r.t. parameters.

Constructor Detail

ParameterJacobianWrapper

public ParameterJacobianWrapper(FirstOrderDifferentialEquations fode,
                        ParameterizedODE pode,
                        ParameterConfiguration[] paramsAndSteps)

Wrap a ParameterizedODE into a ParameterJacobianProvider.

Parameters:

fode - main first order differential equations set

pode - secondary problem, without parameter Jacobian computation skill

paramsAndSteps - parameters and steps to compute the Jacobians df/dp

See Also:

JacobianMatrices.setParameterStep(String, double)

Method Detail

getParametersNames

public java.util.Collection<java.lang.String> getParametersNames()

Get the names of the supported parameters.

Specified by:

getParametersNames in interface Parameterizable

Returns:

parameters names

See Also:

Parameterizable.isSupported(String)

isSupported

public boolean isSupported(java.lang.String name)

Check if a parameter is supported.

Supported parameters are those listed by Parameterizable.getParametersNames().

Specified by:

isSupported in interface Parameterizable

Parameters:

name - parameter name to check

Returns:

true if the parameter is supported

See Also:

Parameterizable.getParametersNames()

computeParameterJacobian

public void computeParameterJacobian(double t,
                            double[] y,
                            double[] yDot,
                            java.lang.String paramName,
                            double[] dFdP)
                              throws DimensionMismatchException,
                                     MaxCountExceededException

Compute the Jacobian matrix of ODE with respect to one parameter.

If the parameter does not belong to the collection returned by Parameterizable.getParametersNames(), the Jacobian will be set to 0, but no errors will be triggered.

Specified by:

computeParameterJacobian in interface ParameterJacobianProvider

Parameters:

t - current value of the independent time variable

y - array containing the current value of the main state vector

yDot - array containing the current value of the time derivative of the main state vector

paramName - name of the parameter to consider

dFdP - placeholder array where to put the Jacobian matrix of the ODE with respect to the parameter

Throws:

DimensionMismatchException - if arrays dimensions do not match equations settings

MaxCountExceededException - if the number of functions evaluations is exceeded