Metadata-Version: 2.1
Name: napari-exodeepfinder
Version: 0.0.9
Summary: A napari plugin for the ExpDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
Home-page: https://github.com/deep-finder/napari-exodeepfinder
Author: Constantin Aronssohn, Arthur Masson
Author-email: cnstt@tutanota.com
License: GPL-3.0-only
Project-URL: Bug Tracker, https://github.com/deep-finder/napari-exodeepfinder/issues
Project-URL: Documentation, https://deep-finder.github.io/napari-exodeepfinder/
Project-URL: Source Code, https://github.com/deep-finder/napari-exodeepfinder
Project-URL: User Support, https://github.com/deep-finder/napari-exodeepfinder/issues
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: Framework :: napari
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Visualization
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Scientific/Engineering :: Image Processing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: exodeepfinder>=0.3.11
Requires-Dist: napari[all]>=0.4.19
Requires-Dist: typing>=3.7.4.3
Requires-Dist: pandas>=2.2.2
Requires-Dist: pillow>=10.3.0
Provides-Extra: testing
Requires-Dist: tox; extra == "testing"
Requires-Dist: pytest; extra == "testing"
Requires-Dist: pytest-cov; extra == "testing"
Requires-Dist: pytest-qt; extra == "testing"

# napari-exodeepfinder

[![License GNU GPL v3.0](https://img.shields.io/pypi/l/napari-exodeepfinder.svg?color=green)](https://github.com/deep-finder/napari-exodeepfinder/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/napari-exodeepfinder.svg?color=green)](https://pypi.org/project/napari-exodeepfinder)
[![Python Version](https://img.shields.io/pypi/pyversions/napari-exodeepfinder.svg?color=green)](https://python.org)
[![tests](https://github.com/deep-finder/napari-exodeepfinder/workflows/tests/badge.svg)](https://github.com/deep-finder/napari-exodeepfinder/actions)
[![codecov](https://codecov.io/gh/deep-finder/napari-exodeepfinder/branch/main/graph/badge.svg)](https://codecov.io/gh/deep-finder/napari-exodeepfinder)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-exodeepfinder)](https://napari-hub.org/plugins/napari-exodeepfinder)

A napari plugin for the ExoDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities.
An orthoslice view has been added for an easier visualisation and annotation process.

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This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

<!--
Don't miss the full getting started guide to set up your new package:
https://github.com/napari/cookiecutter-napari-plugin#getting-started

and review the napari docs for plugin developers:
https://napari.org/plugins/index.html
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## Installation

1. Create a conda environment with python 3.10: `conda create -n napari-exodeepfinder python=3.10`
1. Activate the environment: `conda activate napari-exodeepfinder`
1. Install napari: `pip install napari-exodeepfinder`

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [GNU GPL v3.0] license,
"napari-exodeepfinder" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/deep-finder/napari-exodeepfinder/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
