anndata
apted
biopython
click
cython
cyvcf2
ete3
ipython
joblib
matplotlib
mudata
natsort
networkx<=2.8.3
numba
numpy
pandas
pybnb
pydot
python_sat
pyyaml
scanpy
scikit_learn
scipy
seaborn
termcolor
tqdm

[dev]
black==20.8b1
pre-commit==2.9.3
isort>=5.7.0
pytest-cov

[docs]
memory_profiler>=0.57.0
nbsphinx<0.8.7,>=0.8.6
pyenchant>=3.1.1
pypandoc
requests
sphinx<4.0.3,>=4
sphinx-autodoc-annotation
sphinx-autodoc-typehints>=1.10.3
sphinx-click>=3.0.1
sphinx-paramlinks
sphinx_copybutton
sphinx_gallery>=0.8.2
sphinx_last_updated_by_git
sphinx_rtd_theme
sphinxcontrib-bibtex>=2.1.0
sphinxcontrib-spelling
