# CPU-only requirements (no CUDA/GPU dependencies)
--extra-index-url https://download.pytorch.org/whl/cpu

aiohappyeyeballs==2.6.1
aiohttp==3.9.5
aiosignal==1.3.1
antlr4-python3-runtime==4.9.3
anyio==4.12.0
async-timeout==4.0.3
attrs==23.2.0
biopython==1.84
biotite==1.4.0
biotraj==1.2.2
certifi==2025.11.12
charset-normalizer==3.4.4
click==8.3.1
contourpy==1.3.0
cycler==0.12.1
dill==0.3.8
exceptiongroup==1.2.1
filelock==3.14.0
fonttools==4.55.3
frozenlist==1.4.1
fsspec==2024.3.1
h11==0.16.0
hf-xet==1.2.0
httpcore==1.0.9
httpx==0.28.1
huggingface-hub==0.24.6
hydra-core==1.3.2
idna==3.7
jinja2==3.1.4
joblib==1.4.2
kiwisolver==1.4.7
lightning==2.4.0
lightning-utilities==0.11.2
llvmlite==0.43.0
markdown-it-py==3.0.0
markupsafe==2.1.5
matplotlib==3.9.4
mdurl==0.1.2
mpmath==1.3.0
msgpack==1.1.0
multidict==6.0.5
networkx==3.4.2
numba==0.60.0
numpy==1.26.4
omegaconf==2.3.0
packaging==24.0
pandas==2.3.3
pillow==10.3.0
propcache==0.4.1
pyarrow==22.0.0
pygments==2.19.2
pyparsing==3.2.5
pytest==8.2.0
python-dateutil==2.9.0.post0
python-dotenv==1.2.1
pytorch-lightning==2.6.0
pytz==2025.2
pyyaml==6.0.3
regex==2024.5.15
requests==2.32.2
rich==13.7.1
rootutils==1.0.7
safetensors==0.4.3
scikit-learn==1.6.0
scipy==1.15.3
setuptools==80.9.0
shellingham==1.5.4
six==1.17.0
sympy==1.13.1
threadpoolctl==3.6.0
tokenizers==0.21.0
torch==2.6.0
torchvision==0.21.0
torchaudio==2.6.0
torchmetrics==1.8.2
tqdm==4.67.1
transformers==4.48.3
typer-slim==0.20.0
typing-extensions==4.11.0
tzdata==2025.2
urllib3==2.2.1
wandb==0.23.1
yarl==1.9.4
