LICENSE
MANIFEST.in
README.md
pyproject.toml
bin/cctyper
bin/repeatTrain
bin/repeatType
cctyper/__init__.py
cctyper/blast.py
cctyper/castyping.py
cctyper/controller.py
cctyper/crisprcas.py
cctyper/editdist.py
cctyper/gff.py
cctyper/hmmer.py
cctyper/minced.py
cctyper/plot.py
cctyper/prodigal.py
cctyper/repeat.py
cctyper/resources.py
cctyper/xgb.py
cctyper/xgbtrain.py
cctyper.egg-info/PKG-INFO
cctyper.egg-info/SOURCES.txt
cctyper.egg-info/dependency_links.txt
cctyper.egg-info/requires.txt
cctyper.egg-info/top_level.txt
cctyper/data/CasScoring.csv
cctyper/data/Profiles.tar.gz
cctyper/data/adaptation.json
cctyper/data/cctyper_profiles.hmm.zst
cctyper/data/cutoffs.tab
cctyper/data/interference.json
cctyper/data/repeats.fa
cctyper/data/type_dict.tab
cctyper/data/xgb_repeats.json
cctyper/data/xgb_repeats.model
cctyper/data/xgb_repeats.ubj
test/test_detection.py
test/test_plot.py
test/test_repeat_search.py