Authors.rst
LICENSE.txt
MANIFEST.in
NEWS
setup.cfg
setup.py
proatac/.DS_Store
proatac/__init__.py
proatac/__init__.pyc
proatac/cli.py
proatac/cli.pyc
proatac/proatacHelp.py
proatac/proatacProjectClass.py
proatac/anno/TSS/hg19.refGene.TSS.bed
proatac/anno/TSS/hg19_mm10_c.refGene.TSS.bed
proatac/anno/TSS/hg38.refGene.TSS.bed
proatac/anno/TSS/mm10.refGene.TSS.bed
proatac/anno/TSS/mm9.refGene.TSS.bed
proatac/anno/bedtools/chrom_hg19.sizes
proatac/anno/bedtools/chrom_hg19_mm10_c.sizes
proatac/anno/bedtools/chrom_hg38.sizes
proatac/anno/bedtools/chrom_mm10.sizes
proatac/anno/bedtools/chrom_mm9.sizes
proatac/anno/blacklist/hg19.full.blacklist.bed
proatac/anno/blacklist/hg19_mm10_c.full.blacklist.bed
proatac/anno/blacklist/hg38.full.blacklist.bed
proatac/anno/blacklist/mm10.full.blacklist.bed
proatac/anno/blacklist/mm9.full.blacklist.bed
proatac/anno/multiqc/logo.png
proatac/anno/multiqc/proatac.multiqc.config.yaml
proatac/bin/R/makeCountsTable.R
proatac/bin/R/summitsToCleanPeaks.R
proatac/bin/picard/CollectInsertSizeMetrics.jar
proatac/bin/picard/EstimateLibraryComplexity.jar
proatac/bin/picard/MarkDuplicates.jar
proatac/bin/python/oneProatacSample.py
proatac/bin/python/py3_ATACtrim.py
proatac/bin/python/py3_bedCount.py
proatac/bin/python/py3_makeVvec.py
proatac/bin/snake/Snakefile.proatac.gather
proatac/bin/snake/Snakefile.proatac.scatter
proatac/bin/static/.DS_Store
proatac/bin/static/bedClip_linux
proatac/bin/static/bedClip_mac
proatac/bin/static/bedGraphToBigWig_linux
proatac/bin/static/bedGraphToBigWig_mac