anndata==0.11.4
cellxgene-ontology-guide==1.7.2 # update before a schema migration
click<9
Cython<4
dask[array, dataframe]==2024.12.0
ibis-framework[duckdb]>=10.3
numpy<3
pandas>2,<3
pyarrow>=19
PyYAML<7
scipy<1.16 # broken in 1.15.0 see https://github.com/chanzuckerberg/single-cell-curation/issues/1165
sparse==0.15.1
semver<4
xxhash<4
matplotlib<4
pysam>=0.13.0 # for atac-seq fragment files
