Metadata-Version: 1.2
Name: scipion-em-spoc
Version: 1.0.6
Summary: Plugin to use SPOC programs within the Scipion framework
Home-page: https://github.com/scipion-em/scipion-em-spoc
Author: I2PC
Author-email: scipion@cnb.csic.es
License: UNKNOWN
Project-URL: Bug Reports, https://github.com/scipion-em/scipion-em-spoc/issues
Project-URL: Source, https://github.com/scipion-em/scipion-em-spoc/
Description: ========================
        SPOC plugin
        ========================
        
        This plugin provide wrappers around several programs of `SPOC <https://github.com/MaximilianBeckers/SPOC>`_.
        
        +------------------+------------------+
        | stable: |stable| | devel: | |devel| |
        +------------------+------------------+
        
        .. |stable| image:: http://scipion-test.cnb.csic.es:9980/badges/eman2_prod.svg
        .. |devel| image:: http://scipion-test.cnb.csic.es:9980/badges/eman2_sdevel.svg
        
        
        Installation
        ------------
        
        You will need to use `3.0 <https://github.com/I2PC/scipion/releases/tag/V3.0.0>`_ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
        
        a) Stable version (not avalaible yet)
        
        .. code-block::
        
            scipion installp -p scipion-em-spoc
        
        b) Developer's version
        
            * download repository
        
            .. code-block::
        
                git clone https://github.com/scipion-em/scipion-em-spoc.git
        
            * install
        
            .. code-block::
        
                scipion installp -p path_to_scipion-em-spoc --devel
        
        SPOC binaries will be installed automatically with the plugin.
        
        * Default installation path assumed is ``software/em/spoc-1.0``, if you want to change it, set *SPOC_HOME* in ``scipion.conf`` file pointing to the folder where the SPOC is installed.
        
        To check the installation, simply run one of the following Scipion tests:
        
        .. code-block::
        
           scipion3 tests spoc.tests.test_protocols_spoc.TestFscFdrControl
        
        A complete list of tests can also be seen by executing ``scipion test --show --grep spoc``
        
        Supported versions
        ------------------
        
        * 1.0
        
        Protocols
        ---------
        
        * FSC_FDR Control
        
        References
        ----------
        
        1. Beckers, M., Jakobi, A. J., Sachse, C. (2019) Thresholding of cryo-EM density maps by false discovery rate control. IUCr Journal 6 (1)
        
Keywords: scipion electron-microscopy cryo-em structural-biology image-processing scipion-3.0
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
