CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
ROADMAP.md
pyproject.toml
docs/academic-anchors.md
docs/competitive-analysis.md
docs/launch-blog-zh.md
docs/launch-draft.md
docs/narrative.md
docs/philosophy.md
docs/positioning.md
docs/terminal-preview.png
docs/paper/agentic-metabolic-engineering-paper-v2.md
docs/paper/nier-icse2027.md
docs/paper/paper-review-v2.md
docs/paper/paradigm-comparison.md
docs/paper/references-corrected.md
docs/paper/submission-checklist.md
docs/publish/00-plan.md
docs/publish/agentic-metabolic-engineering-essay.md
docs/publish/github-announcement.md
docs/publish/paper-outline.md
docs/publish/release-announcement-v0.2.0.md
docs/publish/release-notes-v0.1.2.md
docs/publish/release-notes-v0.2.0.md
docs/publish/release-notes-v0.2.1.md
docs/publish/x-post.md
docs/publish/xiaohongshu-post.md
docs/publish/zhihu-post.md
docs/publish/images/competitive-gap-en.png
docs/publish/images/competitive-gap-zh.png
docs/publish/images/cover-alt-zh.png
docs/publish/images/cover-zh.png
docs/publish/images/experiment-30-en.png
docs/publish/images/experiment-30-zh-v.png
docs/publish/images/experiment-30-zh.png
docs/publish/images/four-phases-en.png
docs/publish/images/four-phases-zh-v.png
docs/publish/images/four-phases-zh.png
docs/publish/images/scheduled-vs-metabolism-en.png
docs/publish/images/scheduled-vs-metabolism-zh-v.png
docs/publish/images/scheduled-vs-metabolism-zh.png
docs/publish/images/stack-l5-en.png
docs/publish/images/stack-l5-zh-v.png
docs/publish/images/stack-l5-zh.png
docs/research/competitor-command-diff.md
docs/research/outreach-comment-cc-8856.md
docs/research/outreach-comment-oc-104358.md
docs/research/outreach-followup-cc-8856-alexanderadam.md
docs/research/outreach-log-2026-08-18.md
docs/research/outreach-reply-cc-8856-alexanderadam.md
docs/research/user-outreach-candidates-2026-08-18.md
examples/ci-audit.yml
examples/demo.py
examples/metabolism_benchmark.py
examples/micro_metabolism.py
examples/register_cron.template.sh
examples/register_schedule.template.ps1
examples/registry.example.json
schema/metabolism.schema.json
src/workspace_metabolism/__init__.py
src/workspace_metabolism/__main__.py
src/workspace_metabolism/cli.py
src/workspace_metabolism/core.py
src/workspace_metabolism/mcp_server.py
src/workspace_metabolism.egg-info/PKG-INFO
src/workspace_metabolism.egg-info/SOURCES.txt
src/workspace_metabolism.egg-info/dependency_links.txt
src/workspace_metabolism.egg-info/entry_points.txt
src/workspace_metabolism.egg-info/top_level.txt
tests/conftest.py
tests/test_cli.py
tests/test_core.py
tests/test_mcp.py