python_shape_stats

• python_shape_stats package
  • python_shape_stats.helpers
    • get_camera_properties()
    • get_user_input_for_cam_view()
    • set_camera_view()
    • broken_stick_expectation()
    • broken_stick_empirical()
    • get_dummy()
    • squeeze_categorical_dtypes()
    • weighted_column_mean()
    • weighted_rms()
    • randomize_matrix()
    • animate_vectors()
    • plot_colormaps()
    • make_plotter()
    • add_vectors()
    • add_shape()
    • add_scalar_bar()
    • get_path_to_pinnochio_demo_face()
    • get_path_to_demo_face()
    • get_path_to_simulated_faces()
    • get_path_to_simulated_noses()
    • get_path_to_simulated_foreheads()
    • get_path_to_simulated_metadata()
    • get_path_to_pickled_shape_pca()
    • get_path_to_pickled_shape_hypthesis_test()
    • load_shape_hypothesis_test()
    • load_shape_pca()
    • landmark_3d_to_2d()
    • landmark_2d_to_3d()
    • load_shape()
    • load_shapes_to_array()
    • ismember()
    • TriPolyData
      • TriPolyData.faces_array
      • TriPolyData.save()
      • TriPolyData.write_obj()
    • my_is_iterable()
    • validate_landmark_configuration_and_weights()
    • validate_vector()
    • reshape_vector()
  • python_shape_stats.inlier_processes
    • update_inlier_weights_gaussian()
  • python_shape_stats.procrustes
    • compute_procrustes_transform()
    • compute_rotation()
    • make_translation_matrix()
    • compute_centroid_size()
    • compute_rms_size()
    • compute_centroid()
    • scale_shape()
    • apply_procrustes_transform()
    • conform_p_to_q()
    • do_generalized_procrustes_analysis()
  • python_shape_stats.statistical_shape_models
    • PCA
      • PCA.eig_vec
      • PCA.eig_val
      • PCA.eig_std
      • PCA.cumulative_perc_var
      • PCA.n_dim
      • PCA.transformed_training_data
      • PCA.center_vec
      • PCA.standardize_cols_vec
      • PCA.params
      • PCA.fit_transform()
      • PCA.fit()
      • PCA.transform()
      • PCA.predict()
      • PCA.parallel_analysis()
      • PCA.scree_plot()
      • PCA.cumulative_variance_plot()
      • PCA.parallel_analysis_plot()
      • PCA.broken_stick_plot()
      • PCA.trim_no_pcs()
      • PCA.trim_perc_var()
      • PCA.weighted_transform_to_model()
      • PCA.scale_vec()
      • PCA.maha_dist_to_p_value()
      • PCA.p_value_maha_dist()
      • PCA.get_distance()
    • ShapePCA
      • ShapePCA.average_polydata
      • ShapePCA.reference_polydata
      • ShapePCA.fit()
      • ShapePCA.transform()
      • ShapePCA.fit_transform()
      • ShapePCA.animate_pc()
      • ShapePCA.colormap_pc()
    • PLS
      • PLS.y
      • PLS.x
      • PLS.center_x
      • PLS.center_y
      • PLS.standardize_x
      • PLS.standardize_y
      • PLS.n_obs
      • PLS.x_treated
      • PLS.y_treated
      • PLS.observation_weights
      • PLS.observation_mask
      • PLS.no_y_features
      • PLS.no_x_features
      • PLS.x_mu
      • PLS.x_std
      • PLS.y_mu
      • PLS.y_std
      • PLS.fit()
    • PLS_2B
      • PLS_2B.x_projection_matrix
      • PLS_2B.y_projection_matrix
      • PLS_2B.cov_explained
      • PLS_2B.x_scores
      • PLS_2B.y_scores
      • PLS_2B.n_dim
      • PLS_2B.inner_relation_coefs
      • PLS_2B.perm_test_p_values
      • PLS_2B.transform_x()
      • PLS_2B.transform_y()
      • PLS_2B.fit()
      • PLS_2B.reconstruct_y_from_scores()
      • PLS_2B.reconstruct_x_from_scores()
      • PLS_2B.predict_y_scores_from_x()
      • PLS_2B.predict_x_scores_from_y()
      • PLS_2B.compute_null_distribution()
      • PLS_2B.permutation_test_plot()
    • ShapePLS_2B
      • ShapePLS_2B.animate_latent_dim()
      • ShapePLS_2B.colormap_latent_dim()
    • PLSHypothesisTest
      • PLSHypothesisTest.coefs
      • PLSHypothesisTest.method
      • PLSHypothesisTest.model_stats
      • PLSHypothesisTest.fit()
      • PLSHypothesisTest.run_permutation_test()
    • ShapePLSHypothesisTest
      • ShapePLSHypothesisTest.y
      • ShapePLSHypothesisTest.plot_coefficients()
      • ShapePLSHypothesisTest.plot_r_squared()
      • ShapePLSHypothesisTest.plot_p_values()
      • ShapePLSHypothesisTest.animate_coefficients()
    • simpls()
    • pls_svd()