numpy<3.0,>=1.24
pandas<3.0,>=2.0
scipy<2.0,>=1.10
pyarrow>=12
tqdm>=4.65
hydra-core>=1.3
omegaconf>=2.3
scanpy<2.0,>=1.9
anndata<0.12,>=0.10
matplotlib>=3.7
Pillow>=9.5
tifffile>=2023.7.10
scikit-learn>=1.2
seaborn>=0.12
shapely>=2.0
tensorboard>=2.12
imagecodecs>=2023.1.23
networkx<3.4,>=3.2
h5py>=3.8

[cpu]
torch<2.6,>=2.3
torchvision<0.21,>=0.18

[dev]
pytest>=8
pytest-cov>=5
ruff>=0.5
black>=24.0
pre-commit>=3.6

[docs]
sphinx>=7.0
myst-parser>=2.0
sphinx-rtd-theme>=2.0
