LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
native/Cargo.lock
native/Cargo.toml
native/src/lib.rs
pgse/__init__.py
pgse/cli.py
pgse.egg-info/PKG-INFO
pgse.egg-info/SOURCES.txt
pgse.egg-info/dependency_links.txt
pgse.egg-info/entry_points.txt
pgse.egg-info/requires.txt
pgse.egg-info/top_level.txt
pgse/algos/__init__.py
pgse/algos/aho_corasick_base.py
pgse/algos/aho_corasick_py.py
pgse/algos/native_counter.py
pgse/algos/utils.py
pgse/dataset/__init__.py
pgse/dataset/alphabet.py
pgse/dataset/alphabet_utils.py
pgse/dataset/counts.py
pgse/dataset/file_label.py
pgse/dataset/loader.py
pgse/dataset/loader_inference.py
pgse/environment/__init__.py
pgse/environment/args.py
pgse/environment/ray_env.py
pgse/genome/__init__.py
pgse/genome/cache.py
pgse/genome/kmer.py
pgse/genome/sequence.py
pgse/genome/sequence_manager.py
pgse/genome/utils.py
pgse/log/__init__.py
pgse/log/logger.py
pgse/model/__init__.py
pgse/model/model_trainer.py
pgse/model/pgse_model.py
pgse/model/segment_counter.py
pgse/model/util.py
pgse/model/xgb.py
pgse/pipeline/__init__.py
pgse/pipeline/pgse_inference_pipeline.py
pgse/pipeline/pgse_inference_pipeline_web.py
pgse/pipeline/pgse_pipeline.py
pgse/pipeline/progress_manager.py
pgse/pipeline/regular_pipline.py
pgse/result/__init__.py
pgse/result/fold_result.py
pgse/result/segment_importance.py
pgse/result/training_result.py
pgse/segment/__init__.py
pgse/segment/extender.py
pgse/segment/segment_pool.py
pgse/segment/util.py
pgse/validation/__init__.py
pgse/validation/metrics.py
pgse/validation/utils.py
tests/test_file_label.py
tests/test_pgse.py
tests/test_seg_pool.py
tests/test_sequence.py
tests/test_util.py