Metadata-Version: 2.1
Name: grimoire
Version: 0.0.2
Summary: Biological sequence analysis tools
Home-page: https://github.com/KorfLab/grimoire
Author: Ian Korf
Author-email: ifkorf@gmail.com
License: UNKNOWN
Description: grimoire
        ========
        
        The grimoire pacakage contains libraries and scripts for Biological sequence analysis.
        
        Disclaimer
        ----------
        
        The current developent is highly volatile and not ready for public consumption.
        
        Design Considerations
        ---------------------
        
        The code is designed with the folllowing analyses in mind:
        
        + Gene structure prediction using hidden Markov models and variants
        + Genome annotation quality control
        + Structure-function relationships in sequences (e.g. IME)
        
        
        Programs
        --------
        
        Program names are themed after spell names from the classic RPG
        "Wizardry: Proving Grounds of the Mad Overlord."
        
        | Name      | Meaning    | Function                               |
        |:----------|:-----------|:---------------------------------------|
        | calfo     | x-ray      | genome annotation reporter
        | kandi     | locate     | genome annotation viewer
        | haman     | change     | genome slicer
        | milwa     | light      | hmm buider
        | dumapic   | clarity    | hmm grapher 
        | halito    | fire       | basic hmm decoder
        | mahalito  | big fire   | 2-pass gene decoder
        | morlis    | fear       | annotation comparer (simple)
        | mogref    | iron       | sequence generator
        | mamorlis  | great fear | (planned complex annotation comparer)
        | mahaman   | change     | (planned multi-genome slicer)
        | malor     | apport     | (planned genome lifter)
        | lahalito  | torch      | (planned full genome decoder)
        | tiltowait | explosion  | (planned multi-genome decoder)
        | zilwan    | dispel     | (planned profile/alignment decoder)
        | latumapic | identify   | (planned region-ifier)
        
        
        Contributors
        ------------
        
        + Ian Korf (iankorf)
        + Hannah Lyman (hslyman)
        + Alex Kramer (aklreaxmer)
        + Qijia Liu (joyliu-q)
        + Jack Yu (Angraygs)
        
        Acknowledgements
        ----------------
        
        Thanks to M. O. Trebor and E. W. Werdna for inspiration.
        
        
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
