.gitignore
LICENSE
README.md
setup.py
.github/workflows/merge_test.yaml
.github/workflows/publish.yaml
docs/Makefile
docs/make.bat
docs/source/citing.rst
docs/source/cmd.rst
docs/source/conf.py
docs/source/help.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/quickstart.rst
docs/source/rna004_release_note.rst
docs/source/training.rst
docs/source/_images/RNA004_mapq0_HEK293T.jpg
docs/source/_images/RNA004_mapq0_Hct116.jpg
docs/source/_images/RNA004_mapq20_HEK293T.jpg
docs/source/_images/RNA004_mapq20_Hct116.jpg
docs/source/_images/arabidopsis_hek293t_mixtures.png
docs/source/_images/m6anet_virc_roc_pr.png
figures/m6anet_logo.png
m6anet/__init__.py
m6anet.egg-info/PKG-INFO
m6anet.egg-info/SOURCES.txt
m6anet.egg-info/dependency_links.txt
m6anet.egg-info/entry_points.txt
m6anet.egg-info/requires.txt
m6anet.egg-info/top_level.txt
m6anet/deprecated/__init__.py
m6anet/deprecated/compute_norm_factors.py
m6anet/deprecated/dataprep.py
m6anet/deprecated/inference.py
m6anet/deprecated/train.py
m6anet/model/__init__.py
m6anet/model/model.py
m6anet/model/configs/model_configs/m6anet.toml
m6anet/model/configs/model_configs/prod_pooling_signal.toml
m6anet/model/configs/training_configs/m6anet_train_config.toml
m6anet/model/model_blocks/__init__.py
m6anet/model/model_blocks/blocks.py
m6anet/model/model_blocks/pooling_blocks.py
m6anet/model/model_states/rna002_arabidopsis_virc.pt
m6anet/model/model_states/rna002_hct116.pt
m6anet/model/model_states/rna004_hek293t.pt
m6anet/model/norm_factors/rna002_arabidopsis_virc.joblib
m6anet/model/norm_factors/rna002_hct116.joblib
m6anet/scripts/__init__.py
m6anet/scripts/compute_norm_factors.py
m6anet/scripts/convert.py
m6anet/scripts/dataprep.py
m6anet/scripts/inference.py
m6anet/scripts/train.py
m6anet/tests/conftest.py
m6anet/tests/test_dataprep.py
m6anet/tests/test_inference.py
m6anet/tests/data/data.indiv_proba.csv.gz
m6anet/tests/data/data.info
m6anet/tests/data/data.info.labelled
m6anet/tests/data/data.json
m6anet/tests/data/data.site_proba.csv.gz
m6anet/tests/data/eventalign.index
m6anet/tests/data/eventalign.txt
m6anet/tests/data/sample_config.toml
m6anet/utils/__init__.py
m6anet/utils/builder.py
m6anet/utils/constants.py
m6anet/utils/data_utils.py
m6anet/utils/dataprep_utils.py
m6anet/utils/helper.py
m6anet/utils/inference_utils.py
m6anet/utils/norm_utils.py
m6anet/utils/sampler_utils.py
m6anet/utils/training_utils.py
m6anet/utils/loss_functions/__init__.py
m6anet/utils/loss_functions/loss_functions.py