LICENSE
README.md
setup.py
snipgenie/__init__.py
snipgenie/aligners.py
snipgenie/app.py
snipgenie/browser.py
snipgenie/clustering.py
snipgenie/core.py
snipgenie/db.py
snipgenie/description.txt
snipgenie/entrez.py
snipgenie/fastq_generator.py
snipgenie/gis.py
snipgenie/gui.py
snipgenie/illumina.py
snipgenie/jstester.py
snipgenie/logo.png
snipgenie/plotting.py
snipgenie/plugin.py
snipgenie/pybam.py
snipgenie/qt.py
snipgenie/rdiff.py
snipgenie/simulate.py
snipgenie/snp_typing.py
snipgenie/tables.py
snipgenie/tests.py
snipgenie/tools.py
snipgenie/trees.py
snipgenie/treeview.py
snipgenie/wgmlst.py
snipgenie/widgets.py
snipgenie.egg-info/PKG-INFO
snipgenie.egg-info/SOURCES.txt
snipgenie.egg-info/dependency_links.txt
snipgenie.egg-info/entry_points.txt
snipgenie.egg-info/requires.txt
snipgenie.egg-info/top_level.txt
snipgenie/data/MAP-K10.fa
snipgenie/data/MAP-K10.gb
snipgenie/data/MAP-K10.gb.gff
snipgenie/data/MAP-K10_mask.bed
snipgenie/data/MTB-H37Rv.fa
snipgenie/data/MTB-H37Rv.fa.fai
snipgenie/data/MTB-H37Rv.gb
snipgenie/data/MTB-H37Rv.gb.gff
snipgenie/data/MTB-H37Rv_mask.bed
snipgenie/data/Mbovis.org_db.csv
snipgenie/data/Mbovis_AF212297.fa
snipgenie/data/Mbovis_AF212297.fa.amb
snipgenie/data/Mbovis_AF212297.fa.ann
snipgenie/data/Mbovis_AF212297.fa.bwt
snipgenie/data/Mbovis_AF212297.fa.fai
snipgenie/data/Mbovis_AF212297.fa.pac
snipgenie/data/Mbovis_AF212297.fa.sa
snipgenie/data/Mbovis_AF212297.gb
snipgenie/data/Mbovis_AF212297.gb.gff
snipgenie/data/Mbovis_AF212297.gff
snipgenie/data/Mbovis_AF212297_mask.bed
snipgenie/data/Mbovis_AF212297_proteins.fa
snipgenie/data/Mbovis_AF212297_proteins.fa.pdb
snipgenie/data/Mbovis_AF212297_proteins.fa.phr
snipgenie/data/Mbovis_AF212297_proteins.fa.pin
snipgenie/data/Mbovis_AF212297_proteins.fa.pot
snipgenie/data/Mbovis_AF212297_proteins.fa.psq
snipgenie/data/Mbovis_AF212297_proteins.fa.ptf
snipgenie/data/Mbovis_AF212297_proteins.fa.pto
snipgenie/data/Mbovis_csq_format.gff
snipgenie/data/Mpbovis-PG45.fa
snipgenie/data/Mpbovis-PG45.gb
snipgenie/data/Mpbovis-PG45.gb.gff
snipgenie/data/Msmeg-MC2.fa
snipgenie/data/Msmeg-MC2.gb
snipgenie/data/Msmeg-MC2.gb.gff
snipgenie/data/RD.csv
snipgenie/data/RD_rules.csv
snipgenie/data/Sars-Cov-2.fa
snipgenie/data/Sars-Cov-2.gb
snipgenie/data/Sars-Cov-2.gb.gff
snipgenie/data/dr_spacers.fa
snipgenie/data/dr_spacers_blast.txt
snipgenie/icons/arrow-down.png
snipgenie/icons/arrow-left.png
snipgenie/icons/arrow-right.png
snipgenie/icons/arrow-up.png
snipgenie/icons/copy.png
snipgenie/icons/delete.png
snipgenie/icons/open.png
snipgenie/icons/phylogeny.png
snipgenie/icons/preferences-system.png
snipgenie/icons/reload.png
snipgenie/icons/snp-viewer.png
snipgenie/plugins/assembly.py
snipgenie/plugins/contamination.py
snipgenie/plugins/coverage_viewer.py
snipgenie/plugins/example.py
snipgenie/plugins/filerename.py
snipgenie/plugins/heterozygosity.py
snipgenie/plugins/rdanalysis.py
snipgenie/plugins/species_check.py
snipgenie/plugins/spoligotyping.py
snipgenie/plugins/strain_typing.py
snipgenie/plugins/testing.py
snipgenie/plugins/icons/filerename.png
snipgenie/plugins/icons/tests.png
snipgenie/styles/dark.qss
snipgenie/styles/light.qss
snipgenie/testing/phastsim_output1.fasta
snipgenie/testing/sim.newick