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MANIFEST.in
README.md
build_docs.sh
manifest.uuid
pyproject.toml
setup.py
doc/Makefile
doc/structure.md
doc/source/conf.py
doc/source/index.rst
doc/source/_static/tutorial-pn-diode-JV.png
doc/source/_static/tutorial-pn-diode-JV.svg
doc/source/_static/ubuntu1904.sh
doc/source/_static/gui_tutorial/ib_bands.png
doc/source/_static/gui_tutorial/ib_boundary_cond.png
doc/source/_static/gui_tutorial/ib_layers.png
doc/source/_static/gui_tutorial/ib_materials.png
doc/source/_static/gui_tutorial/ib_mesh_options.png
doc/source/_static/gui_tutorial/ib_opt_fields.png
doc/source/_static/gui_tutorial/ib_output.png
doc/source/_static/gui_tutorial/ib_processes.png
doc/source/_static/gui_tutorial/ib_processes_optics.png
doc/source/_static/gui_tutorial/ib_simulation.png
doc/source/_static/gui_tutorial/si_dark_bands.png
doc/source/_static/gui_tutorial/si_dark_boundary_cond.png
doc/source/_static/gui_tutorial/si_dark_layers.png
doc/source/_static/gui_tutorial/si_dark_materials.png
doc/source/_static/gui_tutorial/si_dark_opt_fields.png
doc/source/_static/gui_tutorial/si_dark_output.png
doc/source/_static/gui_tutorial/si_dark_processes.png
doc/source/_static/gui_tutorial/si_dark_simulation.png
doc/source/_static/gui_tutorial/si_light_bands.png
doc/source/_static/gui_tutorial/si_light_boundary_cond.png
doc/source/_static/gui_tutorial/si_light_layers.png
doc/source/_static/gui_tutorial/si_light_materials.png
doc/source/_static/gui_tutorial/si_light_opt_fields.png
doc/source/_static/gui_tutorial/si_light_output.png
doc/source/_static/gui_tutorial/si_light_processes.png
doc/source/_static/gui_tutorial/si_light_simulation.png
doc/source/_static/gui_tutorial/si_step0_empty.png
doc/source/_static/gui_tutorial/si_step1_doping.png
doc/source/_static/gui_tutorial/si_step1_layers.png
doc/source/_static/gui_tutorial/si_step2_material.png
doc/source/_static/gui_tutorial/si_thick_banddiagram.png
doc/source/_static/gui_tutorial/si_thick_output.png
doc/source/_static/gui_tutorial/si_thick_spatial_plots.png
doc/source/apidoc/modules.rst
doc/source/apidoc/simudo.example.fourlayer.rst
doc/source/apidoc/simudo.example.heterojunction.rst
doc/source/apidoc/simudo.example.marti2002.rst
doc/source/apidoc/simudo.example.pn_benchmark.rst
doc/source/apidoc/simudo.example.pn_diode.rst
doc/source/apidoc/simudo.example.rst
doc/source/apidoc/simudo.fem.rst
doc/source/apidoc/simudo.io.rst
doc/source/apidoc/simudo.mesh.rst
doc/source/apidoc/simudo.physics.rst
doc/source/apidoc/simudo.plot.rst
doc/source/apidoc/simudo.pyaml.rst
doc/source/apidoc/simudo.rst
doc/source/apidoc/simudo.util.rst
doc/source/dev/index.rst
doc/source/dev/physics.rst
doc/source/dev/refactoring_201806.rst
doc/source/dev/thoughts-on-initializing.rst
doc/source/user/gui_tutorial.md
doc/source/user/index.rst
doc/source/user/install.rst
doc/source/user/simudo_install_ubuntu1904.sh
doc/source/user/tutorial.rst
docker/Dockerfile
docker/README.md
docker/_container.sh
docker/patches/dolfin-systemassembler-facet-wise-assembly.patch
gui_test/README.md
gui_test/inline_sigma_project.yaml
gui_test/material_callable_project.yaml
gui_test/test_material_callables.py
gui_test/test_process_hints.py
simudo/__init__.py
simudo/matplotlib_backend.py
simudo/version.py
simudo.egg-info/PKG-INFO
simudo.egg-info/SOURCES.txt
simudo.egg-info/dependency_links.txt
simudo.egg-info/requires.txt
simudo.egg-info/top_level.txt
simudo/example/__init__.py
simudo/example/fourlayer/IV_Analysis.py
simudo/example/fourlayer/__init__.py
simudo/example/fourlayer/fourlayer.py
simudo/example/fourlayer/fourlayer_example.py
simudo/example/fourlayer/sweep_extraction.py
simudo/example/heterojunction/__init__.py
simudo/example/heterojunction/germanium.py
simudo/example/heterojunction/het1d_example.py
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simudo/example/heterojunction/silicongermanium.py
simudo/example/jupyter/SimudoTutorial.ipynb
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simudo/example/marti2002/__init__.py
simudo/example/marti2002/colors.py
simudo/example/marti2002/marti2002.py
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simudo/example/pn_benchmark/__init__.py
simudo/example/pn_benchmark/pn_benchmark.py
simudo/example/pn_benchmark/pn_benchmark_create_submitfiles.py
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simudo/example/pn_diode/__init__.py
simudo/example/pn_diode/pn_diode.py
simudo/example/pn_diode/pn_diode_plot.py
simudo/fem/__init__.py
simudo/fem/adaptive_stepper.py
simudo/fem/assign.py
simudo/fem/debug_probe.py
simudo/fem/delayed_form.py
simudo/fem/dolfin_parameters.py
simudo/fem/expr.py
simudo/fem/extra_bindings.py
simudo/fem/function_space.py
simudo/fem/function_space_cache.py
simudo/fem/function_subspace_registry.py
simudo/fem/ipython.py
simudo/fem/mesh_data.py
simudo/fem/mesh_util.py
simudo/fem/mesh_util1.py1
simudo/fem/newton_solver.py
simudo/fem/offset_partitioning.py
simudo/fem/plot.py
simudo/fem/simudo_math_extras.hpp
simudo/fem/spatial.py
simudo/fem/sympy_dolfin_printer.py
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simudo/fem/compat/__init__.py
simudo/fem/compat/ffc_includes.py
simudo/fem/compat/ffc_jit_lock.py
simudo/fem/compat/ufl_classes_update.py
simudo/gui/__init__.py
simudo/gui/__main__.py
simudo/gui/app.py
simudo/gui/batch.py
simudo/gui/fourlayer_example.yaml
simudo/gui/fourlayer_reference.py
simudo/gui/model.py
simudo/gui/runner_backends.py
simudo/gui/simudo_1d_runner.py
simudo/gui/spatial_extractor.py
simudo/gui/yaml_io.py
simudo/gui/panels/__init__.py
simudo/gui/panels/bands.py
simudo/gui/panels/bcs.py
simudo/gui/panels/layers.py
simudo/gui/panels/mat_ast.py
simudo/gui/panels/materials.py
simudo/gui/panels/opt_fields.py
simudo/gui/panels/output.py
simudo/gui/panels/processes.py
simudo/gui/panels/shared.py
simudo/gui/panels/simulation.py
simudo/gui/panels/stub.py
simudo/io/__init__.py
simudo/io/csv.py
simudo/io/h5yaml.py
simudo/io/output_writer.py
simudo/io/xdmf.py
simudo/materials/__init__.py
simudo/materials/alloy_optics.py
simudo/materials/aluminumarsenide.py
simudo/materials/aluminumgalliumarsenide.py
simudo/materials/galliumarsenide.py
simudo/materials/galliumarsenidenitride.py
simudo/materials/galliumnitride.py
simudo/materials/germanium.py
simudo/materials/helpers.py
simudo/materials/ib_test_material.py
simudo/materials/indiumaluminumarsenide.py
simudo/materials/indiumarsenide.py
simudo/materials/silicon.py
simudo/materials/silicongermanium.py
simudo/memoize/__init__.py
simudo/memoize/memo.py
simudo/memoize/ufl.py
simudo/mesh/__init__.py
simudo/mesh/construction_helper.py
simudo/mesh/construction_helper_example.py
simudo/mesh/domaintag_mshr.py
simudo/mesh/facet.py
simudo/mesh/gmsh.py
simudo/mesh/interval1dtag.py
simudo/mesh/mesh1d.py
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simudo/mesh/meshio.py
simudo/mesh/product2d.py
simudo/mesh/pygmsh.py
simudo/mesh/refine.py
simudo/mesh/topology.py
simudo/misc/__init__.py
simudo/misc/comparison_parameters.py
simudo/misc/sentaurus_import.py
simudo/misc/strandberg_comparison_parameters.py
simudo/misc/strandberg_comparison_parameters_check.py
simudo/misc/visualize_elements.py
simudo/physics/__init__.py
simudo/physics/boundary_conditions.py
simudo/physics/electro_optical_process.py
simudo/physics/heterojunction.py
simudo/physics/material.py
simudo/physics/optical.py
simudo/physics/optical1.py1
simudo/physics/optical_alpha.py
simudo/physics/poisson_drift_diffusion.py
simudo/physics/poisson_drift_diffusion1.py1
simudo/physics/problem_data.py
simudo/physics/problem_data_child.py
simudo/physics/steppers.py
simudo/plot/__init__.py
simudo/plot/matplotlib.py
simudo/plot/pdftoppm.py
simudo/plot/plot.py
simudo/plot/postprocessing.py
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simudo/pyaml/astglobals.py
simudo/pyaml/helper.py
simudo/pyaml/load.py
simudo/pyaml/multidict.py
simudo/pyaml/pyaml1.py
simudo/test/__init__.py
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simudo/test/test_attrproxy.py
simudo/test/test_interp.py
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simudo/test/physics/test_ib_limited_extent.py
simudo/test/physics/test_ib_optics.py
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simudo/test/physics/test_material_loading.py
simudo/test/physics/test_optical_field_sets.py
simudo/test/physics/test_optics.py
simudo/test/physics/test_process_construction.py
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simudo/test/physics/test_runner_characterization.py
simudo/test/physics/test_selfconsistent_optics.py
simudo/test/physics/test_svr_without_yaml.py
simudo/test/physics/test_temperature_default.py
simudo/trash/__init__.py
simudo/trash/adapt_is_broken.py
simudo/trash/assigntest.py
simudo/trash/dP_test_from_pullrequest.py
simudo/trash/demo_advection-diffusion.py
simudo/trash/demo_stationary-advection-diffusion.py
simudo/trash/deplapprox.py
simudo/trash/dfise_convert_sentaurus_ivcurve.py
simudo/trash/dirty_bandplot.py
simudo/trash/dirty_poster_plot.py
simudo/trash/eval_expr.py
simudo/trash/eval_expr_test.py
simudo/trash/exp_quadrature.py
simudo/trash/ft10_poisson_extended.py
simudo/trash/ipy2.py
simudo/trash/logging_test.py
simudo/trash/matt_pls.py
simudo/trash/modify_plot_ylabel_position.py
simudo/trash/onetime_rescale_current.py
simudo/trash/picklehash.py
simudo/trash/pinttest.py
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simudo/trash/plotjv.py
simudo/trash/probe_slow.py
simudo/trash/pvsc2019_abstract_20190119.py
simudo/trash/silicon.py
simudo/trash/simple_model.py
simudo/trash/stupid2d.py
simudo/trash/sympy_dolfin_ccode.py
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simudo/trash/test_h5_extlink.py
simudo/trash/test_poisson_fvm.py
simudo/trash/test_util_probe.py
simudo/trash/timeit_function_eval.py
simudo/trash/ufl_caching.py
simudo/trash/ufltest.py
simudo/trash/yamlannex.py
simudo/trash/api201809_draft/__init__.py
simudo/trash/api201809_draft/classes.py
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simudo/trash/historical/__init__.py
simudo/trash/historical/advection_diffusion_test.py
simudo/trash/historical/diode2.py
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simudo/trash/historical/qflop_test.py
simudo/trash/historical/solution.py
simudo/trash/historical/test_nonlinear_mixed_1d.py
simudo/trash/optics/__init__.py
simudo/trash/optics/msorte.py
simudo/trash/pyaml/__init__.py
simudo/trash/pyaml/astutil.py
simudo/trash/pyaml/pyaml.py
simudo/util/__init__.py
simudo/util/am15.py
simudo/util/attrproxy.py
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simudo/util/blackbody.py
simudo/util/cartesian_product.py
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simudo/util/string_system.py
simudo/util/todo.py
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simudo/util/xcsv.py
simudo/util/xtimeit.py
simudo/util/data/astm_g173_03.npz
simudo/util/pint/constants_en.txt
simudo/util/pint/default_en.txt