docs/Makefile,sha256=LJp7rCQsjgGq6jculbNMUIh7VlPDALs2Ugv2sq_Pg70,610
docs/authors.rst,sha256=C6jppANHWuEnc8_On8ejK85ZHpgBoa3ecZJ5gvUdkBs,28
docs/conf.py,sha256=QrQBAtZpIRqQWo5O_usr6C3UHh2W68OCGYt2bcOEro8,5029
docs/history.rst,sha256=6GtKybnFdujxXakMcb0LHcrFsWwqRh8JJ_xhO_Qxqdg,28
docs/index.rst,sha256=Z_vTaC7gayJ7TICL5TaMyREXN8s5gCq7ab7P0C1TdvU,293
docs/installation.rst,sha256=H7WlUfNruPiAbLnxotX3kWUOLlp0cmLujk_ijsh57sw,1127
docs/make.bat,sha256=EKLrYkvyUAIK46GrQG7BIvmHBFPJDY21x9sULPf6HJU,771
docs/modules.rst,sha256=94E6j1BqJ0FtV9oGXhi4TIDCle4ZvgErRNd_jVFu2Bs,64
docs/phenotrex.cli.rst,sha256=ThAw9cs8YwbuNipowigRIQMFUUurtQHrffTal8Ursv4,1886
docs/phenotrex.io.rst,sha256=3he69lOlH9nR3JjzEex0PEiFmJasoHq1CVGylbHp9ec,490
docs/phenotrex.ml.clf.rst,sha256=bOof3_An2YArprysxHzsHq44muEwYh8Fp8bCBCkdl2Q,496
docs/phenotrex.ml.rst,sha256=A7d9UJs_nu-Tbs51I3T1I_EsKWbcmPBbZY_mpflHJ2I,888
docs/phenotrex.rst,sha256=RtSU-WCqyl15rErtiM1-3EmN_v2dxe-fc8VvCEAIvO0,320
docs/phenotrex.structure.rst,sha256=6GmL1zLhWip-_CMP10b5Y8HRRqIHHUht-1a3bEBI7Uw,374
docs/phenotrex.transforms.rst,sha256=me287h5c_LOB31Z--XsdBpapeTQGwu7BUHQs7twRXqA,571
docs/phenotrex.util.rst,sha256=O6qSYqtVl4yHR7of7iRSmY5hMXoJLDLyCFeph3leA8k,815
docs/readme.rst,sha256=CHvLXujLodofoU1uMS97zbiLOEEwQayh7_X8EITjqT8,27
docs/usage.rst,sha256=wkAa2yFwmStiVE2Ky5jAB17GNLTV2u2t_ZAONDslqO0,242
docs/_build/html/_static/file.png,sha256=XEvJoWrr84xLlQ9ZuOUByjZJUyjLnrYiIYvOkGSjXj4,286
docs/_build/html/_static/minus.png,sha256=R-f8UNs2mfHKQc6aL_ogLADF0dUYDFX2K6hZsb1swAg,90
docs/_build/html/_static/plus.png,sha256=VBFRmblqEwy6AhR8R8DetD3Mm58ItRYruoZCs0mArGM,90
phenotrex/__init__.py,sha256=KfmkYpWZ2Blo2OMENgIWQsjJQGGvx7W5Fckig-Rglu4,211
phenotrex/bin/prodigal.linux,sha256=gKPXrLCLqfY93mtu9Olew1YSisNV82lg6nIvOBFQ8kY,13599280
phenotrex/bin/prodigal.osx.10.9.5,sha256=Y7gK-mHMck-il5fWmA0_Nsxm3nM3_G-rZDhvO_56qFs,28025528
phenotrex/bin/prodigal.windows.exe,sha256=0uycpWKhCVnfKBK-dx5cZN9sIw2-vuUsPskGtRdJiIo,12148400
phenotrex/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
phenotrex/cli/cccv.py,sha256=cGy-QNUZLFkiIW6tPOKh0W34NzjvLm6COQbxwqvdHJY,1721
phenotrex/cli/clf_opt.py,sha256=xghTdPnf8pmej1MIoopuuU2ElD0vI_vT-B0aHBlPmFA,1528
phenotrex/cli/compute_genotype.py,sha256=vfPbrkPYJK1MBIr45zAX63BSLa7X0svZ12FeUGVNQsY,1095
phenotrex/cli/cv.py,sha256=0JBz4yj64pjQKRukU9fJ86fH0YsP7bgm5tcYLyZtiSo,2027
phenotrex/cli/generic_func.py,sha256=sqCKsfWMxgkscEnHoIBeetLSbdVgibdsvKP-b7B2nmM,6775
phenotrex/cli/generic_opt.py,sha256=42XZI_MZ6yoRJQDUSilLYc7I_b1vXYV_lNrE24XbUkc,1475
phenotrex/cli/get_weights.py,sha256=5BlfaXKtNsZVT0NlS_42HATRW4E7LrLaihucrbQTYyY,668
phenotrex/cli/main.py,sha256=qPO9PyKcg8dvraLLu-_XrtRYFR3CdrvrkSG-Esof-aE,2061
phenotrex/cli/plot.py,sha256=_VTG7NWbDw04wEI8qlbTI82AbWwNKTDy-KvLI-yKl0w,6813
phenotrex/cli/predict.py,sha256=AlBAVaCMH_BlltsUT8HRIIzwf65DgVUdfK7tPieimX4,1998
phenotrex/cli/train.py,sha256=SeefKuvsguPGSny2Mng3zH_1Kluyjn5NcjijO4NuG0U,999
phenotrex/io/__init__.py,sha256=j7J1K4hk0tvt5Xq6eZlZyOhGyGMKzcNtb0vcl7nnQeA,383
phenotrex/io/flat.py,sha256=-beR3DSNUau2INO6g8DnvN3tb3k_kdj_tI2Op_R5XSw,16008
phenotrex/io/serialization.py,sha256=qQd9e0Jx137955uJ53OR1DHC2UYzUSP_nGQ7XndWwWM,1520
phenotrex/ml/__init__.py,sha256=y4jUevSwI35KLT0m6bDrKxRJQg__iBcBMGe-RGdJ3xI,196
phenotrex/ml/cccv.py,sha256=vnhJN67dhLHpASi7-obIxP9l36ZHY0qhQ95a4yBDHUc,9760
phenotrex/ml/feature_select.py,sha256=cgfOzd5xLDGsjAB8xKA8L3CY1tE5eomT1-Ge0Vc4mOk,2637
phenotrex/ml/prediction.py,sha256=Zrm_dI-uyIkzjkFluc5xrceOcSdTyw2OGTqeoeC6Vaw,4201
phenotrex/ml/shap_handler.py,sha256=lqQkY6pWnETl3un96atBnFjaIBEyYpE1yiMoHKFtn4Q,13194
phenotrex/ml/trex_classifier.py,sha256=FfiYOGqQE8VgWiANhTL2ZBRa_iSBCgUOoNFgb5Qtmio,15637
phenotrex/ml/clf/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
phenotrex/ml/clf/svm.py,sha256=U9wOXBXWRN8nMY9kIjgxb3-gRv_HXw4FBMiL992JXOY,6456
phenotrex/ml/clf/xgbm.py,sha256=jFwzvFeCSNr0Ao7ULCJc-w_OTA5X0oHMeCLZGqrRRgQ,3719
phenotrex/structure/__init__.py,sha256=VksuSelaKK6LsK0Txi6IyicL_3oDbD6XkIdINsgyBkI,49
phenotrex/structure/records.py,sha256=NfQulclWSTk8CPIN3TkdPrYivWmulB8VJkjPgWLIx00,1790
phenotrex/transforms/__init__.py,sha256=qWVf4V-YRNX6iTP46noUwWxYAgNyG2PywAv9zv0oSmQ,232
phenotrex/transforms/annotation.py,sha256=-JkZrRtwKMoX72jz1EoGMhF62xtqU973hiDeNTBXRuI,6439
phenotrex/transforms/resampling.py,sha256=GNg5xtJarP6Zg2ouFtXZPXkdjpcrIkG4bOB08w2Otvs,5283
phenotrex/util/__init__.py,sha256=VksuSelaKK6LsK0Txi6IyicL_3oDbD6XkIdINsgyBkI,49
phenotrex/util/external_data.py,sha256=EuvdcvD1Y7RgbXpZ8M3fUNnp1vEX_mhaa0lrhrqaV0A,2150
phenotrex/util/helpers.py,sha256=ca33NwKXS03ugN1kIUbj3H3UuDW_RwOZimXsFAUwx7k,1169
phenotrex/util/logging.py,sha256=-SoleYvhataquk9mP5UWRCrzTkzlJa1_QvkVoIHdADc,1351
phenotrex/util/plotting.py,sha256=3Qm2a-_EBrw8djjTim_qFfjGP-0Q5-TxomBHs20caAA,5882
phenotrex/util/taxonomy.py,sha256=9YANXEwoxS2HSbPM9Gy8K_BqZ2mdkmixHLlJyo-JvoA,2195
tests/__init__.py,sha256=FxXWHd52KP8Z4mLAphl1Bp01OJ236IMGXGX1IRK1CFY,327
tests/targets.py,sha256=fiPXhdeRucxf2RD11CLBdWq6dYOnc2Uusifz06Bj_3A,6920
tests/test_ml.py,sha256=OVTttz4MqtNii9wbyKlZZqu_9zX38i7pPQ8pFtMG-Ws,11530
tests/test_shap_handler.py,sha256=APhTeegeyAVIYIqXZIDBPA0NayKLU9_d09FHciNKsFk,4114
tests/test_transforms.py,sha256=mv2gWBis-liRDA2dpQylQGNT5lwV9gc5i_2qBfWmJKI,1618
tests/test_util.py,sha256=1kkHmEn8f2SbExZpEcujQJ888kKrz2h3U_-SAIKoTJQ,3268
tests/test_data/flat/T3SS/T3SS.genotype,sha256=Pu9BcM6mkzsMcsqt5puSP13PyjCr9noA4vx7WjcPsnA,7370832
tests/test_data/flat/T3SS/T3SS.phenotype,sha256=IObExCtOGD1BpK7VxUoPZU22hh9pc7llmKV-HgmulLQ,5618
tests/test_data/flat/T3SS/T3SS.taxids,sha256=NJCc6sG39qu_0cfWpGW3sLoLXKay8z5vNBdQDun3U4s,6666
tests/test_data/flat/T3SS_trunc/T3SS_trunc.genotype,sha256=8yd5q5XV4vKgSsePFMD-Lbte7iNTPT8IOJJiGyT8MjI,2630249
tests/test_data/flat/T3SS_trunc/T3SS_trunc.phenotype,sha256=jiTMkevk0tx3a0legq5JqjL25KX_3HRlMGTEDbQp5u4,1946
tests/test_data/flat/T3SS_trunc/T3SS_trunc.taxids,sha256=FRBWnbk0orUnginxEsMPKgRDwB4dif0IiRZqzIB_yy8,2276
tests/test_data/genomic/GCA_000692775_1_trunc2.faa,sha256=7ZKNtWDZbjVNZvZ6W5lIoppGQxCiufRIxYPmtqCtP0I,163856
tests/test_data/genomic/GCA_000692775_1_trunc2.faa.gz,sha256=dwcrzbpX9fudfpPsD6V_OIS5VRW6kryscEPJIdUdEzU,77375
tests/test_data/genomic/GCA_000692775_1_trunc2.fna,sha256=TXhV1fjduVPglyGE71bI0SF-8Q4we-E6_uP4xX1WbsE,405022
tests/test_data/genomic/GCA_000692775_1_trunc2.fna.gz,sha256=n8_RK6W-ULBbFi9h0f9eUXSNiDy93k81pDYKev11nxk,119132
tests/test_data/models/T3SS/T3SS.svm.pkl,sha256=r3AAq-Xfuxe4Nnay1xlluVhEQlEUfi98Fbb9GXHb__U,1920366
tests/test_data/models/T3SS/T3SS.xgb.pkl,sha256=hIT4qdgVZQNvuxRj1-tbPeRpZ2iNcorQw6SUgS0pgKo,1734469
tests/test_data/models/T3SS_trunc/T3SS_trunc.svm.pkl,sha256=JBZcQzYmz-Ta3xzZg4fwA2YIKMvbZRnEQpDzBesdZwA,284766
tests/test_data/models/T3SS_trunc/T3SS_trunc.xgb.pkl,sha256=5_99SArRELwXu4oWZnrcQnBMwVQFyyNRUqZS2NSWQuE,831879
phenotrex-0.5.1.dist-info/AUTHORS.rst,sha256=gZupahf2IEniiBO5ulBXrp2TlYtn7CHtXzEXBvRYEyw,227
phenotrex-0.5.1.dist-info/LICENSE,sha256=EQtmPTse9TE7hUk7hD-qWwdd5s29uDvENGSuQQadbLA,665
phenotrex-0.5.1.dist-info/METADATA,sha256=G_PS7O24zgsnQ0LYC2cBVk8F9-gJpmdLVIf7a6nfDfI,2125
phenotrex-0.5.1.dist-info/WHEEL,sha256=ADKeyaGyKF5DwBNE0sRE5pvW-bSkFMJfBuhzZ3rceP4,110
phenotrex-0.5.1.dist-info/entry_points.txt,sha256=ueZLCehXFerZYB46wfgbwOBnV5rQIotlwoJbP9ch2Ms,55
phenotrex-0.5.1.dist-info/top_level.txt,sha256=WnJr7puCi1Y6mVYZnwYpBoX6tGrc1V8a22Vxbi9kVbI,46
phenotrex-0.5.1.dist-info/RECORD,,
