AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
requirements_tests.txt
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/mri_tools.rst
docs/readme.rst
docs/usage.rst
examples/__init__.py
examples/optimize_dvs.py
examples/pre_processing_pipeline/0_parse_scanner_settings.py
examples/pre_processing_pipeline/1_write_phase_enc_dir.py
examples/pre_processing_pipeline/2_apply_corrections.py
examples/pre_processing_pipeline/3_coregistration.py
examples/pre_processing_pipeline/4_create_binary_masks.py
examples/pre_processing_pipeline/__init__.py
mri_tools/__init__.py
mri_tools/common.py
mri_tools/shell_utils.py
mri_tools/wm_parcellation.py
mri_tools.egg-info/PKG-INFO
mri_tools.egg-info/SOURCES.txt
mri_tools.egg-info/dependency_links.txt
mri_tools.egg-info/not-zip-safe
mri_tools.egg-info/requires.txt
mri_tools.egg-info/top_level.txt
mri_tools/dvs/__init__.py
mri_tools/dvs/base.py
mri_tools/dvs/io.py
mri_tools/dvs/plot.py
mri_tools/dvs/restructuring.py
mri_tools/pipelines/__init__.py
mri_tools/pipelines/tbss_wmp.py
mri_tools/plots/__init__.py
mri_tools/plots/layouts.py
mri_tools/plots/plot_tbss_wmp_results.py
mri_tools/plots/scatter_plots.py
mri_tools/plots/widgets.py
mri_tools/registration/__init__.py
mri_tools/registration/common.py
mri_tools/registration/coregister.py
mri_tools/registration/register_atlas.py
mri_tools/scanner_settings/__init__.py
mri_tools/scanner_settings/parsers/__init__.py
mri_tools/scanner_settings/parsers/common.py
mri_tools/scanner_settings/parsers/siemens.py
mri_tools/tbss/__init__.py
mri_tools/tbss/tbss.py
mri_tools/tbss/nipype_overwrite/__init__.py
mri_tools/tbss/nipype_overwrite/tbss_workflow.py
mri_tools/topup_eddy/__init__.py
mri_tools/topup_eddy/common.py
mri_tools/topup_eddy/nipype_overwrite/__init__.py
mri_tools/topup_eddy/nipype_overwrite/all_peb_pipeline.py
tests/__init__.py
tests/test_mri_tools.py