LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
tox.ini
uv.lock
doc/Makefile
doc/api.rst
doc/conf.py
doc/index.rst
doc/introduction.rst
doc/make.bat
doc/tune_toc.rst
doc/user_guide.rst
doc/whats_new.rst
doc/_static/git.png
doc/_static/theme_overrides.css
doc/_templates/class.rst
doc/_templates/function.rst
doc/_templates/module.rst
doc/analysis/index.rst
doc/examples/index.rst
doc/examples/pybids_tutorial.md
doc/examples/reports_tutorial.md
doc/examples/statsmodels_tutorial.md
doc/includes/big_toc_css.rst
doc/includes/bigger_toc_css.rst
doc/layout/index.rst
doc/reports/index.rst
doc/sphinxext/docscrape.py
doc/sphinxext/docscrape_sphinx.py
doc/sphinxext/github.py
doc/sphinxext/math_dollar.py
doc/sphinxext/numpydoc.py
src/bids/__init__.py
src/bids/__main__.py
src/bids/_version.py
src/bids/cli.py
src/bids/config.py
src/bids/conftest.py
src/bids/due.py
src/bids/exceptions.py
src/bids/utils.py
src/bids/ext/__init__.py
src/bids/external/__init__.py
src/bids/external/inflect.py
src/bids/layout/__init__.py
src/bids/layout/db.py
src/bids/layout/index.py
src/bids/layout/layout.py
src/bids/layout/models.py
src/bids/layout/utils.py
src/bids/layout/validation.py
src/bids/layout/writing.py
src/bids/layout/config/bids.json
src/bids/layout/config/derivatives.json
src/bids/layout/tests/__init__.py
src/bids/layout/tests/conftest.py
src/bids/layout/tests/test_db.py
src/bids/layout/tests/test_layout.py
src/bids/layout/tests/test_layout_on_examples.py
src/bids/layout/tests/test_models.py
src/bids/layout/tests/test_path_building.py
src/bids/layout/tests/test_remote_bids.py
src/bids/layout/tests/test_rootpath.py
src/bids/layout/tests/test_utils.py
src/bids/layout/tests/test_validation.py
src/bids/layout/tests/test_writing.py
src/bids/layout/tests/data/sample_validation_config.json
src/bids/modeling/__init__.py
src/bids/modeling/auto_model.py
src/bids/modeling/hrf.py
src/bids/modeling/model_spec.py
src/bids/modeling/statsmodels.py
src/bids/modeling/report/__init__.py
src/bids/modeling/report/base.py
src/bids/modeling/report/report_template.jinja
src/bids/modeling/report/utils.py
src/bids/modeling/report/viz.py
src/bids/modeling/tests/__init__.py
src/bids/modeling/tests/test_automodel.py
src/bids/modeling/tests/test_hrf.py
src/bids/modeling/tests/test_model_spec.py
src/bids/modeling/tests/test_statsmodels.py
src/bids/modeling/tests/test_transformations.py
src/bids/modeling/transformations/__init__.py
src/bids/modeling/transformations/base.py
src/bids/modeling/transformations/compute.py
src/bids/modeling/transformations/munge.py
src/bids/reports/__init__.py
src/bids/reports/conftest.py
src/bids/reports/parameters.py
src/bids/reports/parsing.py
src/bids/reports/report.py
src/bids/reports/utils.py
src/bids/reports/config/converters.json
src/bids/reports/tests/__init__.py
src/bids/reports/tests/test_parameters.py
src/bids/reports/tests/test_parsing.py
src/bids/reports/tests/test_report.py
src/bids/tests/__init__.py
src/bids/tests/test_cli.py
src/bids/tests/test_config.py
src/bids/tests/utils.py
src/bids/tests/data/images/3d.nii.gz
src/bids/tests/data/images/4d.bval
src/bids/tests/data/images/4d.nii.gz
src/bids/variables/__init__.py
src/bids/variables/collections.py
src/bids/variables/entities.py
src/bids/variables/io.py
src/bids/variables/variables.py
src/bids/variables/tests/__init__.py
src/bids/variables/tests/test_collections.py
src/bids/variables/tests/test_entities.py
src/bids/variables/tests/test_io.py
src/bids/variables/tests/test_variables.py
src/pybids.egg-info/PKG-INFO
src/pybids.egg-info/SOURCES.txt
src/pybids.egg-info/dependency_links.txt
src/pybids.egg-info/entry_points.txt
src/pybids.egg-info/requires.txt
src/pybids.egg-info/top_level.txt
tests/data/bids_specs_with_oligarchy.json
tests/data/7t_trt/README
tests/data/7t_trt/dataset_description.json
tests/data/7t_trt/participants.tsv
tests/data/7t_trt/task-rest_acq-fullbrain_bold.json
tests/data/7t_trt/task-rest_acq-fullbrain_run-1_physio.json
tests/data/7t_trt/task-rest_acq-fullbrain_run-2_physio.json
tests/data/7t_trt/task-rest_acq-prefrontal_bold.json
tests/data/7t_trt/task-rest_acq-prefrontal_physio.json
tests/data/7t_trt/test.bval
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tests/data/7t_trt/sub-01/ses-1/sub-01_ses-1_scans.tsv
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tests/data/7t_trt/sub-01/ses-1/func/sub-01_ses-1_task-rest_acq-fullbrain_run-2_bold.nii.gz
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tests/data/7t_trt/sub-01/ses-1/func/sub-01_ses-1_task-rest_acq-prefrontal_bold.nii.gz
tests/data/7t_trt/sub-01/ses-1/func/sub-01_ses-1_task-rest_acq-prefrontal_physio.tsv.gz
tests/data/7t_trt/sub-01/ses-2/sub-01_ses-2_scans.tsv
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tests/data/7t_trt/sub-02/ses-1/func/sub-02_ses-1_task-rest_acq-prefrontal_bold.nii.gz
tests/data/7t_trt/sub-02/ses-1/func/sub-02_ses-1_task-rest_acq-prefrontal_physio.tsv.gz
tests/data/7t_trt/sub-02/ses-2/sub-02_ses-2_scans.tsv
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tests/data/7t_trt/sub-02/ses-2/func/sub-02_ses-2_task-rest_acq-prefrontal_physio.tsv.gz
tests/data/7t_trt/sub-03/sub-03-test.bval
tests/data/7t_trt/sub-03/sub-03_sessions.tsv
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tests/data/synthetic/task-nback_physio.json
tests/data/synthetic/task-nback_stim.json
tests/data/synthetic/task-rest_bold.json
tests/data/synthetic/task-rest_physio.json
tests/data/synthetic/code/create_synthetic_ds.sh
tests/data/synthetic/code/dwi.bval
tests/data/synthetic/code/dwi.bvec
tests/data/synthetic/derivatives/fmriprep/dataset_description.json
tests/data/synthetic/derivatives/fmriprep/task-nback_bold.json
tests/data/synthetic/derivatives/fmriprep/task-rest_bold.json
tests/data/synthetic/derivatives/fmriprep/sub-01/ses-01/func/sub-01_ses-01_task-nback_run-01_desc-confounds_regressors.tsv
tests/data/synthetic/derivatives/fmriprep/sub-01/ses-01/func/sub-01_ses-01_task-nback_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii
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