Metadata-Version: 1.1
Name: deepsignal-plant
Version: 0.1.4
Summary: A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads of plants
Home-page: https://github.com/PengNi/deepsignal-plant
Author: Peng Ni
Author-email: 543943952@qq.com
License: GNU General Public License v3 (GPLv3)
Download-URL: https://github.com/PengNi/deepsignal-plant/archive/0.1.4.tar.gz
Description-Content-Type: UNKNOWN
Description: deepsignal-plant
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        Release
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        0.1.4
        -----
        modify *call_freq* module for large genomes,
        
        fix bug of extrating contig name from fast5s
        
        
        
        0.1.3
        -----
        add ranger optimizer and modify train module,
        
        fix Queue.qsize() NotImplementedError in macOS partially, however *call_mods* in CUDA mode in macOS still doesn't work,
        
        add `init_model` option in train module
        
        
        
        0.1.2
        -----
        change imports in ref_reader,
        
        change requirements,
        
        fix and modify denoise module,
        
        fix MKL_THREADING_LAYER error temporarily,
        
        add `--region` option,
        
        a combined 5mC model replacing CG/CHG/CHH models
        
        
        0.1.1
        -----
        fix bug and optimize call_mods without GPU, add call_freq funciton
        
        
        0.1.0
        -----
        Release the first vesrion of deepsignal-plant package
Keywords: methylation,nanopore,neural network
Platform: any
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 4 - Beta
Classifier: Natural Language :: English
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
