LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
./pymantra/network/enrichment/Exceptions.cpp
./pymantra/network/enrichment/pyutils.cpp
./pymantra/network/enrichment/spearman.cpp
./pymantra/network/enrichment/statsutils.cpp
./pymantra/network/enrichment/LSO/LocalSearch.cpp
./pymantra/network/enrichment/LSO/lso.cpp
./pymantra/network/enrichment/LSO/lso_utils.cpp
./pymantra/network/enrichment/LSO/objective_functions.cpp
./pymantra/network/enrichment/LSO/reaction_graph.cpp
pymantra/__init__.py
pymantra/boost_available.cpp
pymantra/boost_version.cpp
pymantra/datasets.py
pymantra/plotting.py
pymantra/statics.py
pymantra.egg-info/PKG-INFO
pymantra.egg-info/SOURCES.txt
pymantra.egg-info/dependency_links.txt
pymantra.egg-info/not-zip-safe
pymantra.egg-info/requires.txt
pymantra.egg-info/top_level.txt
pymantra/data/example_graph.graphml
pymantra/data/example_graph_query.py
pymantra/data/metabolite_data.csv
pymantra/data/microbiome_data.csv
pymantra/data/sample_groups.csv
pymantra/database/APINetworkGenerator.py
pymantra/database/__init__.py
pymantra/database/base.py
pymantra/database/exceptions.py
pymantra/database/query.py
pymantra/database/utils.py
pymantra/namemapping/__init__.py
pymantra/namemapping/metaboanalyst_mapping.py
pymantra/namemapping/name_mapping.py
pymantra/namemapping/databases/__init__.py
pymantra/namemapping/databases/sqlite_base.py
pymantra/namemapping/databases/ChEBI/__init__.py
pymantra/namemapping/databases/ChEBI/chebi.db
pymantra/namemapping/databases/ChEBI/query.py
pymantra/namemapping/databases/ChEBI/reduce_columns.py
pymantra/namemapping/databases/HMDB/__init__.py
pymantra/namemapping/databases/HMDB/hmdb.db
pymantra/namemapping/databases/HMDB/query.py
pymantra/namemapping/databases/HMDB/xml_processing.py
pymantra/namemapping/databases/Reactome/__init__.py
pymantra/namemapping/databases/Reactome/query.py
pymantra/namemapping/databases/Reactome/reactome.db
pymantra/namemapping/databases/mantra_db/__init__.py
pymantra/namemapping/databases/mantra_db/mantra.db
pymantra/namemapping/databases/mantra_db/query.py
pymantra/network/__init__.py
pymantra/network/enrichment_functions.py
pymantra/network/exceptions.py
pymantra/network/io_estimation.py
pymantra/network/ld_estimation.py
pymantra/network/non_parametric_multivariate.py
pymantra/network/reaction_associations.py
pymantra/network/enrichment/LocalSearch.py
pymantra/network/enrichment/__init__.py
pymantra/network/enrichment/LSO/__init__.py
tests/test_LocalSearch.py
tests/test_api_query.py
tests/test_correction.py
tests/test_cython_extensions.py
tests/test_database_query.py
tests/test_datasets.py
tests/test_enrichment_functions.py
tests/test_ld_estimation.py
tests/test_multiomics_enrichment.py
tests/test_plotting.py
tests/test_reaction_graph.py
tests/test_spearman.py
tests/test_utils.py