.bumpversion.cfg
.cookiecutterrc
.coveragerc
.editorconfig
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.md
README.rst
setup.cfg
setup.py
tox.ini
ci/bootstrap.py
database/MirTarget_3.0_prediction_result_all_humans.hsa.geneSymbol
database/human_singleIsoform_refSeqList.grch38.tsv
database/miRDB_v5.0_prediction_result.hsa.geneSymbol
database/targetScan_mirTarBase.union.pairList
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/installation.rst
docs/readme.rst
docs/requirements.txt
docs/spelling_wordlist.txt
docs/usage.rst
docs/reference/index.rst
docs/reference/mirtime.rst
src/mirtime/__init__.py
src/mirtime/__main__.py
src/mirtime/cli.py
src/mirtime/clustering.py
src/mirtime/correlation.py
src/mirtime/firstfilter.py
src/mirtime/gplearning.py
src/mirtime/run_DESeq.R
src/mirtime/run_limma_with_expression_table.R
src/mirtime/util.py
src/mirtime.egg-info/PKG-INFO
src/mirtime.egg-info/SOURCES.txt
src/mirtime.egg-info/dependency_links.txt
src/mirtime.egg-info/entry_points.txt
src/mirtime.egg-info/not-zip-safe
src/mirtime.egg-info/top_level.txt
tests/test_mirtime.py