Metadata-Version: 2.1
Name: itaxotools-taxi2
Version: 2.2.0
Summary: Calculation and analysis of pairwise sequence distances
Author-email: Stefanos Patmanidis <stefanpatman91@gmail.com>, Vladimir Kharchev <necrosovereign@gmail.com>
Project-URL: Homepage, https://itaxotools.org/
Project-URL: Source, https://github.com/iTaxoTools/TaxI2
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Development Status :: 5 - Production/Stable
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: Implementation :: CPython
Requires-Python: <4,>=3.10.2
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: itaxotools-common
Requires-Dist: itaxotools-spart-parser
Requires-Dist: itaxotools-calculate-distances
Requires-Dist: BioPython
Requires-Dist: alfpy
Requires-Dist: numpy
Requires-Dist: openpyxl
Requires-Dist: pandas
Requires-Dist: seaborn
Provides-Extra: dev
Requires-Dist: setuptools-scm; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: ruff; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-cov; extra == "dev"
Requires-Dist: coverage; extra == "dev"

# TaxI2

[![PyPI - Version](https://img.shields.io/pypi/v/itaxotools-taxi2)](
    https://pypi.org/project/itaxotools-taxi2)
[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/itaxotools-taxi2)](
    https://pypi.org/project/itaxotools-taxi2)
[![PyPI - License](https://img.shields.io/pypi/l/itaxotools-taxi2)](
    https://pypi.org/project/itaxotools-taxi2)
[![GitHub - Tests](https://img.shields.io/github/actions/workflow/status/iTaxoTools/TaxI2/test.yml?label=tests)](
    https://github.com/iTaxoTools/TaxI2/actions/workflows/test.yml)

Calculate genetic differences between DNA sequences,

This is a computational backend. For the GUI application, please visit
[TaxIGui](https://github.com/iTaxoTools/TaxIGui).


## Installation

TaxI2 is available on PyPI. You can install it through `pip`:

```
pip install itaxotools-taxi2
```

## Executables

[![Windows](https://img.shields.io/badge/Windows-blue.svg?style=for-the-badge&logo=windows)](
    https://github.com/iTaxoTools/TaxIGui/releases/latest)
[![MacOS](https://img.shields.io/badge/macOS-gray.svg?style=for-the-badge&logo=apple)](
    https://github.com/iTaxoTools/TaxIGui/releases/latest)

Explore the most recent executables by visiting [the latest TaxIGui release page](
    https://github.com/iTaxoTools/TaxIGui/releases/latest).

For users seeking the legacy application (v2.0.0), you may find it [here](
    https://github.com/iTaxoTools/TaxI2/releases/tag/v2.0.0).

## Python API
A new API is exposed with the latest backend. See `scripts/*.py` for some examples.
