.gitignore
LICENSE
README.md
requirements.txt
setup.py
.github/workflows/docs.yml
.github/workflows/python-package.yml
.github/workflows/tests.yml
docs/conf.py
docs/index.rst
docs/modules.rst
docs/pymgpipe.rst
examples/test_diet.csv
examples/workflow.ipynb
pymgpipe/__init__.py
pymgpipe/coupling.py
pymgpipe/diet.py
pymgpipe/fva.py
pymgpipe/io.py
pymgpipe/logger.py
pymgpipe/main.py
pymgpipe/metrics.py
pymgpipe/modeling.py
pymgpipe/nmpc.py
pymgpipe/utils.py
pymgpipe.egg-info/PKG-INFO
pymgpipe.egg-info/SOURCES.txt
pymgpipe.egg-info/dependency_links.txt
pymgpipe.egg-info/requires.txt
pymgpipe.egg-info/top_level.txt
pymgpipe/resources/diets/AverageEuropeanDiet.txt
pymgpipe/resources/diets/DACHDiet.txt
pymgpipe/resources/diets/GlutenFreeDiet.txt
pymgpipe/resources/diets/HighFatLowCarbDiet.txt
pymgpipe/resources/diets/HighFiberDiet.txt
pymgpipe/resources/diets/HighProteinDiet.txt
pymgpipe/resources/diets/MediterraneanDiet.txt
pymgpipe/resources/diets/Type2DiabetesDiet.txt
pymgpipe/resources/diets/UnhealthyDiet.txt
pymgpipe/resources/diets/VeganDiet.txt
pymgpipe/resources/diets/VegetarianDiet.txt
pymgpipe/resources/miniTaxa/TaxaA.xml.gz
pymgpipe/resources/miniTaxa/TaxaB.xml.gz
pymgpipe/resources/miniTaxa/TaxaC.xml.gz
pymgpipe/resources/miniTaxa/TaxaD.xml.gz
pymgpipe/resources/models/mini_model.json
pymgpipe/resources/models/mini_model.mat
pymgpipe/resources/models/mini_model.xml
pymgpipe/resources/models/mini_model.xml.gz
pymgpipe/resources/problems/mini_model.lp
pymgpipe/resources/problems/mini_model.lp.gz
pymgpipe/resources/problems/mini_model.mps
pymgpipe/resources/problems/mini_model.mps.gz
pymgpipe/tests/conftest.py
pymgpipe/tests/test_build.py
pymgpipe/tests/test_coupling.py
pymgpipe/tests/test_diet.py
pymgpipe/tests/test_e2e.py
pymgpipe/tests/test_fva.py
pymgpipe/tests/test_io.py
pymgpipe/tests/test_utils.py