CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
conda-recipe/meta.yaml
environments/scOPE_working_environment.yml
environments/scOPE_working_environment_v2.yml
environments/scope-dev.yml
scope/__init__.py
scope/classification/__init__.py
scope/classification/base.py
scope/classification/models.py
scope/decomposition/__init__.py
scope/decomposition/base.py
scope/decomposition/cnmf.py
scope/decomposition/factor_analysis.py
scope/decomposition/ica.py
scope/decomposition/nmf.py
scope/decomposition/pca.py
scope/decomposition/svd.py
scope/evaluation/__init__.py
scope/evaluation/metrics.py
scope/evaluation/svd_evaluation.py
scope/io/__init__.py
scope/io/loaders.py
scope/pipeline/__init__.py
scope/pipeline/bulk_pipeline.py
scope/pipeline/sc_pipeline.py
scope/preprocessing/__init__.py
scope/preprocessing/alignment.py
scope/preprocessing/bulk.py
scope/preprocessing/single_cell.py
scope/projection/__init__.py
scope/utils/__init__.py
scope/utils/gene_utils.py
scope/utils/hyperparameter_search.py
scope/utils/logging.py
scope/utils/validation.py
scope/visualization/__init__.py
scope/visualization/embeddings.py
scope_bio.egg-info/PKG-INFO
scope_bio.egg-info/SOURCES.txt
scope_bio.egg-info/dependency_links.txt
scope_bio.egg-info/requires.txt
scope_bio.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_evaluation.py
tests/test_pipeline.py
tests/test_utils.py