Dockerfile
LICENSE
MANIFEST.in
README.rst
build.sh
build_local_nighresjava.sh
cbstools-lib-files.sh
imcntk-lib-files.sh
setup.cfg
setup.py
nighres/__init__.py
nighres/global_settings.py
nighres/utils.py
nighres.egg-info/PKG-INFO
nighres.egg-info/SOURCES.txt
nighres.egg-info/dependency_links.txt
nighres.egg-info/requires.txt
nighres.egg-info/top_level.txt
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nighres/atlases/brain-segmentation-prior3.0/atlas_amygdalaL.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_amygdalaR.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_amygdalaR.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_arteries.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_arteries.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_background.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_background.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_brainstem.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_brainstem.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_caudateL.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_caudateL.xml
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nighres/atlases/brain-segmentation-prior3.0/atlas_cerebellum_gm.raw
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nighres/atlases/brain-segmentation-prior3.0/atlas_cerebellum_wm.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_cerebrum_gmL.raw
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nighres/atlases/brain-segmentation-prior3.0/atlas_globus_pallidusL.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_globus_pallidusL.xml
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nighres/atlases/brain-segmentation-prior3.0/atlas_hippocampusL.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_hippocampusR.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_hippocampusR.xml
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nighres/atlases/brain-segmentation-prior3.0/atlas_putamenL.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_putamenR.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_putamenR.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_sinuses.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_sinuses.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_sulcal_csf.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_sulcal_csf.xml
nighres/atlases/brain-segmentation-prior3.0/atlas_thalamusL.raw
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nighres/atlases/brain-segmentation-prior3.0/atlas_ventricle3.raw
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nighres/atlases/brain-segmentation-prior3.0/atlas_ventricleL.raw
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nighres/atlases/brain-segmentation-prior3.0/atlas_ventricleR.raw
nighres/atlases/brain-segmentation-prior3.0/atlas_ventricleR.xml
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.1.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.1.txt~
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.2.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.3.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.4.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.4.txt~
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.4b.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-3.0.txt~
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-experimental.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-experimental.txt~
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-quant-3.0.5.txt
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-quant-3.0.5.txt~
nighres/atlases/brain-segmentation-prior3.0/brain-atlas-quant-3.0.8.txt
nighres/atlases/brain-segmentation-prior3.0/topology-atlas.raw
nighres/atlases/brain-segmentation-prior3.0/topology-atlas.xml
nighres/atlases/topology_lut/critical186LUT.raw.gz
nighres/atlases/topology_lut/critical266LUT.raw.gz
nighres/atlases/topology_lut/critical618LUT.raw.gz
nighres/atlases/topology_lut/critical626LUT.raw.gz
nighres/atlases/topology_lut/critical66LUT.raw.gz
nighres/atlases/topology_lut/criticalWCLUT.raw.gz
nighres/brain/__init__.py
nighres/brain/dots_segmentation.py
nighres/brain/extract_brain_region.py
nighres/brain/filter_stacking.py
nighres/brain/intensity_based_skullstripping.py
nighres/brain/mgdm_segmentation.py
nighres/brain/mp2rage_dura_estimation.py
nighres/brain/mp2rage_skullstripping.py
nighres/cortex/__init__.py
nighres/cortex/cruise_cortex_extraction.py
nighres/data/__init__.py
nighres/data/download_data.py
nighres/filtering/__init__.py
nighres/filtering/filter_ridge_structures.py
nighres/filtering/multiscale_vessel_filter.py
nighres/filtering/recursive_ridge_diffusion.py
nighres/filtering/total_variation_filtering.py
nighres/intensity/__init__.py
nighres/intensity/background_estimation.py
nighres/intensity/flash_t2s_fitting.py
nighres/intensity/intensity_propagation.py
nighres/intensity/lcat_denoising.py
nighres/intensity/lcpca_denoising.py
nighres/intensity/mp2rage_t1_mapping.py
nighres/intensity/mp2rageme_pd_mapping.py
nighres/intensity/phase_unwrapping.py
nighres/intensity/t2s_optimal_combination.py
nighres/io/__init__.py
nighres/io/io_mesh.py
nighres/io/io_volume.py
nighres/laminar/__init__.py
nighres/laminar/laminar_iterative_smoothing.py
nighres/laminar/laminar_regional_approximation.py
nighres/laminar/profile_averaging.py
nighres/laminar/profile_meshing.py
nighres/laminar/profile_sampling.py
nighres/laminar/volumetric_layering.py
nighres/microscopy/__init__.py
nighres/microscopy/mgdm_cells.py
nighres/microscopy/stack_intensity_regularisation.py
nighres/registration/__init__.py
nighres/registration/apply_coordinate_mappings.py
nighres/registration/embedded_antsreg.py
nighres/registration/generate_coordinate_mapping.py
nighres/registration/simple_align.py
nighres/segmentation/__init__.py
nighres/segmentation/conditional_shape.py
nighres/segmentation/fuzzy_cmeans.py
nighres/shape/__init__.py
nighres/shape/levelset_fusion.py
nighres/shape/simple_skeleton.py
nighres/shape/topology_correction.py
nighres/statistics/__init__.py
nighres/statistics/segmentation_statistics.py
nighres/surface/__init__.py
nighres/surface/levelset_to_mesh.py
nighres/surface/levelset_to_probability.py
nighres/surface/mesh_to_levelset.py
nighres/surface/probability_to_levelset.py
nighres/surface/surface_inflation.py
nighres/surface/surface_mesh_mapping.py
nighres/surface/surface_som_mapping.py
nighres/surface/volume_som_mapping.py
nighresjava/Jama-mipav.jar
nighresjava/__init__.py
nighresjava/_nighresjava.so
nighresjava/cbstools-lib.jar
nighresjava/commons-math3-3.5.jar
nighresjava/imcntk-lib.jar
nighresjava/nighresjava.jar