LICENSE
README.md
pyproject.toml
graintrace/__init__.py
graintrace/base_material_approximation.py
graintrace/cluster_indicator.py
graintrace/construct_nf_mesh.py
graintrace/construct_voronoi_mesh.py
graintrace/construct_voxel_mesh.py
graintrace/experiment_postprocessing.py
graintrace/experiment_rotation_helper.py
graintrace/generate_random_crystal.py
graintrace/grain_graph_matching.py
graintrace/graph_spatial_cluster.py
graintrace/ipf_postprocess.py
graintrace/material_calibration.py
graintrace/nf_grid_conversion.py
graintrace/orientation_helper.py
graintrace/plot_postprocessing.py
graintrace/rare_cluster_indicator.py
graintrace/rare_criteria_selection_library.py
graintrace/rei_comparison.py
graintrace/run_cpfe_simulation.py
graintrace/scan_stitching_comparison.py
graintrace/similarity_metric_library.py
graintrace/simulation_postprocessing.py
graintrace/synthetic_hedm_generator.py
graintrace/taylor.py
graintrace/tess_to_gnn.py
graintrace/user_data_class.py
graintrace.egg-info/PKG-INFO
graintrace.egg-info/SOURCES.txt
graintrace.egg-info/dependency_links.txt
graintrace.egg-info/entry_points.txt
graintrace.egg-info/requires.txt
graintrace.egg-info/top_level.txt
graintrace/cpfe_base/grid_file.i
graintrace/cpfe_base/initial_conditions.i
graintrace/cpfe_base/initial_conditions_ff.i
graintrace/cpfe_base/neml2_cpfe.i
graintrace/cpfe_base/neml2_cpfe_calibration.i
graintrace/cpfe_base/run_cpfe.i
graintrace/cpfe_base/transfer.i
graintrace/hedm_stitching_techniques/__init__.py
graintrace/hedm_stitching_techniques/dataclass_utils.py
graintrace/hedm_stitching_techniques/naive_stitching.py
graintrace/hedm_stitching_techniques/pair_stitching_utils.py
graintrace/hedm_stitching_techniques/region_base_stitching.py
graintrace/hedm_stitching_techniques/scan_tessellation.py
graintrace/mcp/__init__.py
graintrace/mcp/app.py
graintrace/mcp/confirm.py
graintrace/mcp/deps.py
graintrace/mcp/jobs.py
graintrace/mcp/recipes.py
graintrace/mcp/render.py
graintrace/mcp/sample_meta.py
graintrace/mcp/server.py
graintrace/mcp/tool_paths.py
graintrace/mcp/tools.example.json
graintrace/mcp/recipes/README.md
graintrace/mcp/recipes/cpfe_simulation.md
graintrace/mcp/recipes/experiment_metadata.md
graintrace/mcp/recipes/ff_reconstruction.md
graintrace/mcp/recipes/meshing.md
graintrace/mcp/recipes/microstructure_generation.md
graintrace/mcp/recipes/rei_comparison.md
graintrace/mcp/recipes/stitching.md
graintrace/mcp/tools/__init__.py
graintrace/mcp/tools/analysis.py
graintrace/mcp/tools/calibration.py
graintrace/mcp/tools/codebase.py
graintrace/mcp/tools/reconstruction.py
graintrace/mcp/tools/simulation.py
graintrace/mcp/tools/stitching.py
graintrace/mcp/tools/synthetic.py
graintrace/mcp/tools/system.py
graintrace/mcp/tools/tracking.py
graintrace/mcp/tools/viz.py
graintrace/nf/__init__.py
graintrace/nf/convert.py
graintrace/nf/image.py
graintrace/nf/mesh.py
graintrace/nf/metrics.py
graintrace/nf/segment.py
graintrace/nf/smooth.py
tests/test_clustering.py
tests/test_dependencies.py
tests/test_orientation.py
tests/test_postprocessing.py
tests/test_rare_criteria.py
tests/test_rei_comparison.py
tests/test_similarity_metrics.py
tests/test_stitching.py
tests/test_user_data.py