Metadata-Version: 1.2
Name: PyFGCZ
Version: 3.0.1
Summary: PyFGCZ contains BioBeamer and FCC python code.
Home-page: https://github.com/fgcz/PyFGCZ
Author: Christian Panse
Author-email: cp@fgcz.ethz.ch
License: GPLv3
Description: PyFGCZ
        ======
        
        *BioBeamer* helps to collect vast amounts of instrument data (M|G|TBytes).
        An example configuration collecting mass spectrometric measurement of more
        then a dozen devices can be seen through
        http://fgcz-ms.uzh.ch/config/BioBeamer.xml.
        
        *FCC* is a minimalistic workflow engine.
        The specification/properties of the program are as follow:
        
        - converting instrument files, e.g., RAW-files to all kinds of formats
        
        - being generic
        
        - follows FGCZ hierarch storage granularity: project, user, instrument, time range
        
        - multi-platform, host, task
        
        - configurable through XML file which means new converter by new tag in XML file NO CODE CHANGE!
        
        - stdout and errout through Syslog
        
        A current configuration can be found through http://fgcz-ms.uzh.ch/config/fcc_config.xml.
        
        
        Install
        -------
        
        ::
            pip3 install PyFGCZ
        
        Usage
        -----
        
        adapt the following scripts
        
        *Linux*
        
        ::
            fcc_run_linux.py --ncpu 1 --hostname fgcz-s-021 --output __runme.bash --exec --loop
        
        
        *Windows*
        
        ::
            C:\Python37\python.exe c:\FGCZ\fcc\fcc_run_windows.py --ncpu 1 --exec --loop
        
        
        See also
        --------
        
        - https://github.com/fgcz/BioBeamer
        
        - https://github.com/fgcz/fcc 
        
        
        References
        ----------
        
        *FCC - An automated rule-based processing tool for life science data*,
        Simon Barkow-Oesterreicher, Can Türker and Christian Panse,
        Source Code for Biology and Medicine20138:3 `DOI: 10.1186/1751-0473-8-3`__.
        
        __ http://dx.doi.org/10.1186%2F1751-0473-8-3
        
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: System Administrators
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Utilities
Requires-Python: >3.5
