# CHANGELOG
Versioning is matching the app releases.

# v1.1

- mappy v2.30 with mapping params (followed by post-filtering)
  - reads with mean baseQ<7 are not aligned - sometimes dorado reports rubbish that stalls aligner
  - 1-pass: genome (r/tRNA masked) + r/tRNA: ``-ax splice -m13 -s20 --secondary=no``
  - 2-pass: r/tRNA: ``-a -k7 -w3 -n1 -m13 -s50 -A2 -B1 -O2,24 -E1,0 --secondary=no``
  - post-filtering: soft-clipped fraction<0.5 & de<0.1 (0.2 for rRNA; 0.3 for tRNA)
