Metadata-Version: 2.0
Name: django-hpo-terms
Version: 0.6.0
Summary: Django app to parse, store, and update HPO terms
Home-page: https://github.com/genomics-geek/django-hpo-terms
Author: Michael A. Gonzalez
Author-email: genomics.geek.04.22@gmail.com
License: MIT
Keywords: django-hpo-terms
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Framework :: Django
Classifier: Framework :: Django :: 1.10
Classifier: Framework :: Django :: 1.11
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Requires-Dist: djangorestframework (==3.7.7)
Requires-Dist: django-filter (==1.1.0)
Requires-Dist: django-genome (==0.4.0)
Requires-Dist: django-genomix (==0.5.0)
Requires-Dist: django-model-utils (==3.1.1)
Requires-Dist: django-user-activities (==0.4.1)
Requires-Dist: pronto (==0.10.2)

=============================
Django HPO Terms
=============================

.. image:: https://badge.fury.io/py/django-hpo-terms.svg
    :target: https://badge.fury.io/py/django-hpo-terms

.. image:: https://travis-ci.org/chopdgd/django-hpo-terms.svg?branch=develop
    :target: https://travis-ci.org/chopdgd/django-hpo-terms

.. image:: https://codecov.io/gh/chopdgd/django-hpo-terms/branch/develop/graph/badge.svg
    :target: https://codecov.io/gh/chopdgd/django-hpo-terms

.. image:: https://pyup.io/repos/github/chopdgd/django-hpo-terms/shield.svg
    :target: https://pyup.io/repos/github/chopdgd/django-hpo-terms/
    :alt: Updates

.. image:: https://pyup.io/repos/github/chopdgd/django-hpo-terms/python-3-shield.svg
    :target: https://pyup.io/repos/github/chopdgd/django-hpo-terms/
    :alt: Python 3

Django app to parse, store, and update HPO terms

Documentation
-------------

The full documentation is at https://django-hpo-terms.readthedocs.io.

Quickstart
----------

Install Django HPO Terms::

    pip install django-hpo-terms

Add it to your `INSTALLED_APPS` (along with DRF and django-filters):

.. code-block:: python

    INSTALLED_APPS = (
        ...
        'rest_framework',
        'django_filters',
        ...
        'hpo_terms',
        'genome',
        ...
    )

Add Django HPO Terms's URL patterns:

.. code-block:: python

    from hpo_terms import urls as hpo_terms_urls


    urlpatterns = [
        ...
        url(r'^', include(hpo_terms_urls, namespace='hpo_terms')),
        ...
    ]

Features
--------

* TODO

Running Tests
-------------

Does the code actually work?

::

    source <YOURVIRTUALENV>/bin/activate
    (myenv) $ pip install tox
    (myenv) $ tox

Credits
-------

Tools used in rendering this package:

*  Cookiecutter_
*  `cookiecutter-djangopackage`_

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`cookiecutter-djangopackage`: https://github.com/pydanny/cookiecutter-djangopackage




History
-------

0.1.0 (2017-12-29)
++++++++++++++++++

* First release on PyPI.
* Initial models and REST API.

0.2.0 (2017-12-31)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.1.0...v0.2.0)>`_

* Added syncing of database with online HPO resources.

0.3.0 (2017-01-02)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.2.0...v0.3.0)>`_

* Added Disease genes model and REST API.
* Synced Disease genes from online HPO resource.

0.3.1 (2017-01-04)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.3.0...v0.3.1)>`_

* Fixed minor bugs
* Added better test coverage for hpo_sync.

0.4.0 (2017-01-05)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.3.1...v0.4.0)>`_

* Improved REST API filters.

0.4.1 (2017-01-09)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.0...v0.4.1)>`_

* Fixed issues with migrations.

0.4.2 (2017-01-12)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.1...v0.4.2)>`_

* Fixed route names for SimpleRouter.

0.5.0 (2017-02-09)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.2...v0.5.0)>`_

* Add gene symbol filter for diseases API
* Added HPO term label to disease API
* updated requirements to the latest


0.6.0 (2017-03-30)
++++++++++++++++++

`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.5.0...v0.6.0)>`_

* updated some dependencies


