Metadata-Version: 2.1
Name: genome-seq-finder
Version: 0.1.0
Summary: Generates sequence matches given FNA files and a regex expression
License: MIT
Author: José Cabeda
Author-email: jecabeda@gmail.com
Requires-Python: >=3.10,<4.0
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Dist: biopython (>=1.80,<2.0)
Requires-Dist: duckdb (>=0.6.1,<0.7.0)
Requires-Dist: fastapi (>=0.89.1,<0.90.0)
Requires-Dist: pandas (>=1.5.3,<2.0.0)
Requires-Dist: pytest (>=7.2.1,<8.0.0)
Requires-Dist: typer[all] (>=0.7.0,<0.8.0)
Description-Content-Type: text/markdown

## Genome

Given a list of regex sequences look on FNA files for its match

## Usage

```shell

python3 main.py data --output csv

```

## Install locally

Requires having pipx and poetry

```
pipx install poetry
poetry install
genome
```

## Example sequences

Please check the [patterns file](./data/patterns.txt)

