Metadata-Version: 2.5
Name: Sequential_Fish
Version: 1.2b0
Summary: Open source package deploying a complete quantification pipeline for analysis of sequential smFish images. Raw data can then be analysed by custom means or with out of the bow analysis pipelined provided.
Project-URL: Homepage, https://github.com/SlimaniF/Sequential_Fish
Project-URL: Wiki, https://github.com/SlimaniF/Sequential_Fish/wiki
Project-URL: Issues, https://github.com/SlimaniF/Sequential_Fish/issues
Author-email: Slimani Floric <floric.slimani@live.fr>
License-File: LICENCE
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.12
Requires-Dist: af-eraser>=0.1.0
Requires-Dist: big-fish-reloaded==0.6.2
Requires-Dist: czifile
Requires-Dist: lxml
Requires-Dist: magicgui
Requires-Dist: matplotlib
Requires-Dist: napari[pyside]
Requires-Dist: numpy
Requires-Dist: ome-types
Requires-Dist: openpyxl
Requires-Dist: pandas
Requires-Dist: pebble
Requires-Dist: scikit-image
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: smfishtools
Requires-Dist: smfishtools>=0.1.0
Requires-Dist: tqdm
Description-Content-Type: text/markdown

Quantification and analysis pipeline for Sequential Fish data.
DOI : https://zenodo.org/account/settings/github/repository/2Echoes/Sequential_Fish

# TODO :  
* **Viewer** : Update Viewer call to main with new_run_path selection.  
* **analysis** : Implement RNA (target) filtering in analysis.main
* **pipeline** : dapi alignement
* **pipeline** : background removal
