Metadata-Version: 2.1
Name: mrnaScan
Version: 0.1.2
Summary: Identify exons and 3'UTR of each reads for full-length mRNA-seq
Home-page: https://github.com/0CBH0/mrnaScan
Author: 0CBH0
Author-email: maodatou88@163.com
License: MIT
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE

# mrnaScan

The Python toolkits designed to identify exons and 3'UTR of each reads for bulk/single-cell full-length mRNA-seq

## Installation
~~~
python3 -m pip install --upgrade mrnaScan
~~~

## Usage
~~~
# Basic usage
mrnaScan [options] -i <input.bam> -r <reference.gtf>

# For more information
mrnaScan -h
~~~

## Output
* *_exon_info.h5: a hdf5 file include count table of pesudo-transcripts and their exon information
* *_utr_info.tsv: a tab-separated table of 3'utr length of each gene

## Features
* The exons and 3'utr of each reads
* The pesudo-transcripts defined via the combination of exons
* The count table of pesudo-transcripts
* Other feature would be supported in the future ...


