.gitignore
LICENSE
README.md
pyproject.toml
.github/workflows/python-package.yml
tidesurf/__init__.py
tidesurf/counter.py
tidesurf/main.py
tidesurf/transcript.py
tidesurf.egg-info/PKG-INFO
tidesurf.egg-info/SOURCES.txt
tidesurf.egg-info/dependency_links.txt
tidesurf.egg-info/entry_points.txt
tidesurf.egg-info/requires.txt
tidesurf.egg-info/top_level.txt
tidesurf/tests/__init__.py
tidesurf/tests/test_counter.py
tidesurf/tests/test_main.py
tidesurf/tests/test_read.py
tidesurf/tests/test_transcript.py
tidesurf/tests/test_data/adata_cr_out.h5ad
tidesurf/tests/test_data/adata_cr_out_3p.h5ad
tidesurf/tests/test_data/genes.gtf
tidesurf/tests/test_data/whitelist.tsv
tidesurf/tests/test_data/whitelist_3p.tsv
tidesurf/tests/test_data/test_dir_count/outs/possorted_genome_bam.bam
tidesurf/tests/test_data/test_dir_count/outs/possorted_genome_bam.bam.bai
tidesurf/tests/test_data/test_dir_count/outs/filtered_feature_bc_matrix/barcodes.tsv.gz
tidesurf/tests/test_data/test_dir_count_3p/outs/possorted_genome_bam.bam
tidesurf/tests/test_data/test_dir_count_3p/outs/possorted_genome_bam.bam.bai
tidesurf/tests/test_data/test_dir_count_3p/outs/filtered_feature_bc_matrix/barcodes.tsv.gz
tidesurf/tests/test_data/test_dir_mult_3p/outs/per_sample_outs/sample_1/count/sample_alignments.bam
tidesurf/tests/test_data/test_dir_mult_3p/outs/per_sample_outs/sample_1/count/sample_alignments.bam.bai
tidesurf/tests/test_data/test_dir_mult_3p/outs/per_sample_outs/sample_1/count/sample_filtered_feature_bc_matrix/barcodes.tsv.gz
tidesurf/tests/test_data/test_dir_multi/outs/per_sample_outs/sample_1/count/sample_alignments.bam
tidesurf/tests/test_data/test_dir_multi/outs/per_sample_outs/sample_1/count/sample_alignments.bam.bai
tidesurf/tests/test_data/test_dir_multi/outs/per_sample_outs/sample_1/count/sample_filtered_feature_bc_matrix/barcodes.tsv.gz