.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CITATION.cff
CODE_OF_CONDUCT.md
LICENCE.md
README.md
pyproject.toml
setup.cfg
tox.ini
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/deploy.yml
.github/workflows/linting.yml
.github/workflows/test.yml
.github/workflows/update_project_board.yml
.napari-hub/DESCRIPTION.md
.napari-hub/config.yml
configs/cell_config.json
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
docs/_static/epitools-cell-stats.mp4
docs/_static/epitools-colourmaps.mp4
docs/_static/epitools-export.mp4
docs/_static/epitools-logo.png
docs/_static/epitools-projection.mp4
docs/_static/epitools-segmentation.mp4
docs/api/cell_statistics.rst
docs/api/index.rst
docs/api/projection.rst
docs/api/segmentation.rst
docs/napari_plugin/index.rst
sample_data/8bitDataset/test_image-projected-segmented-seeds.npy
sample_data/8bitDataset/test_image-projected-segmented-stats.csv
sample_data/8bitDataset/test_image-projected-segmented.tif
sample_data/8bitDataset/test_image-projected.tif
sample_data/8bitDataset/Benchmark/ProjIm.mat
sample_data/8bitDataset/Benchmark/RegIm.mat
sample_data/8bitDataset/Benchmark/RegIm_wClahe.mat
sample_data/8bitDataset/Benchmark/SegResults.mat
sample_data/8bitDataset/Benchmark/Surfaces.mat
sample_data/8bitDataset/Benchmark/TrackingStart.mat
src/epitools/__init__.py
src/epitools/_reader.py
src/epitools/_sample_data.py
src/epitools/_version.py
src/epitools/_writer.py
src/epitools/main.py
src/epitools/napari.yaml
src/epitools.egg-info/PKG-INFO
src/epitools.egg-info/SOURCES.txt
src/epitools.egg-info/dependency_links.txt
src/epitools.egg-info/entry_points.txt
src/epitools.egg-info/requires.txt
src/epitools.egg-info/top_level.txt
src/epitools/_datasets/8bitDataset/test_image.tif
src/epitools/analysis/__init__.py
src/epitools/analysis/cell_statistics.py
src/epitools/analysis/projection.py
src/epitools/analysis/segmentation.py
src/epitools/widgets/__init__.py
src/epitools/widgets/cell_statistics.py
src/epitools/widgets/dialogue.py
src/epitools/widgets/projection.py
src/epitools/widgets/projection_2ch.py
src/epitools/widgets/quality_metrics.py
src/epitools/widgets/segmentation.py
tests/__init__.py
tests/conftest.py
tests/test__writer.py
tests/test_cell_statistics.py
tests/test_dialogue.py
tests/test_projection.py
tests/test_segmentation.py