LICENSE
README.md
pyproject.toml
src/biosingularity/__init__.py
src/biosingularity/__main__.py
src/biosingularity/attest.py
src/biosingularity/audit.py
src/biosingularity/batch.py
src/biosingularity/bench.py
src/biosingularity/bibtex.py
src/biosingularity/billing.py
src/biosingularity/certainty.py
src/biosingularity/classify.py
src/biosingularity/cli.py
src/biosingularity/config.py
src/biosingularity/corroborate.py
src/biosingularity/decompose.py
src/biosingularity/discovery.py
src/biosingularity/eval.py
src/biosingularity/freshness.py
src/biosingularity/funding.py
src/biosingularity/graph.py
src/biosingularity/ground.py
src/biosingularity/health.py
src/biosingularity/impact.py
src/biosingularity/judge.py
src/biosingularity/judge_eval.py
src/biosingularity/mcp_server.py
src/biosingularity/metering.py
src/biosingularity/models.py
src/biosingularity/nlp.py
src/biosingularity/pubmed.py
src/biosingularity/remediation.py
src/biosingularity/report.py
src/biosingularity/reward.py
src/biosingularity/scan.py
src/biosingularity/scoring.py
src/biosingularity/server.py
src/biosingularity/snapshot.py
src/biosingularity/store.py
src/biosingularity/uncheckable.py
src/biosingularity/verify.py
src/biosingularity.egg-info/PKG-INFO
src/biosingularity.egg-info/SOURCES.txt
src/biosingularity.egg-info/dependency_links.txt
src/biosingularity.egg-info/entry_points.txt
src/biosingularity.egg-info/requires.txt
src/biosingularity.egg-info/top_level.txt
src/biosingularity/data/cellosaurus_problematic.json
src/biosingularity/data/discovery_benchmark.json
src/biosingularity/data/funders_registry.json
src/biosingularity/microbench/__init__.py
src/biosingularity/microbench/harness.py
src/biosingularity/microbench/tasks.py
src/biosingularity/sources/__init__.py
src/biosingularity/sources/cellosaurus.py
src/biosingularity/sources/chembl.py
src/biosingularity/sources/chembl_local.py
src/biosingularity/sources/clinicaltrials.py
src/biosingularity/sources/clinvar_local.py
src/biosingularity/sources/crossref.py
src/biosingularity/sources/crosswalk.py
src/biosingularity/sources/dbnsfp_local.py
src/biosingularity/sources/ddinter_local.py
src/biosingularity/sources/depmap_local.py
src/biosingularity/sources/dgidb_local.py
src/biosingularity/sources/disgenet_local.py
src/biosingularity/sources/eqtl_local.py
src/biosingularity/sources/europepmc.py
src/biosingularity/sources/funder_registry.py
src/biosingularity/sources/gnomad_local.py
src/biosingularity/sources/gwas_local.py
src/biosingularity/sources/hpo_local.py
src/biosingularity/sources/nih_reporter.py
src/biosingularity/sources/nsf.py
src/biosingularity/sources/ontology_local.py
src/biosingularity/sources/openaire.py
src/biosingularity/sources/openalex_local.py
src/biosingularity/sources/openfda_label.py
src/biosingularity/sources/openfda_local.py
src/biosingularity/sources/opentargets_local.py
src/biosingularity/sources/pharmbloom.py
src/biosingularity/sources/pharmgkb_local.py
src/biosingularity/sources/pmc_fulltext.py
src/biosingularity/sources/retractions_local.py
src/biosingularity/sources/scite.py
src/biosingularity/sources/string_local.py
src/biosingularity/sources/ukri.py
src/biosingularity/sources/usaspending.py
tests/test_attest.py
tests/test_audit.py
tests/test_batch.py
tests/test_bench.py
tests/test_bibtex.py
tests/test_billing.py
tests/test_cellosaurus.py
tests/test_certainty.py
tests/test_chembl.py
tests/test_chembl_local.py
tests/test_chembl_retry.py
tests/test_classify.py
tests/test_cli_billing.py
tests/test_clinicaltrials.py
tests/test_clinvar.py
tests/test_corroborate.py
tests/test_crossref.py
tests/test_ddinter.py
tests/test_decompose.py
tests/test_depmap.py
tests/test_dgidb_string.py
tests/test_discovery.py
tests/test_discovery_citations.py
tests/test_disgenet.py
tests/test_drug_labels.py
tests/test_eqtl.py
tests/test_europepmc.py
tests/test_eval.py
tests/test_freshness.py
tests/test_funder_registry.py
tests/test_funders.py
tests/test_funding.py
tests/test_graph.py
tests/test_ground.py
tests/test_ground_coverage.py
tests/test_ground_variants.py
tests/test_gwas.py
tests/test_health.py
tests/test_hpo.py
tests/test_impact.py
tests/test_judge.py
tests/test_judge_eval.py
tests/test_mcp.py
tests/test_metering.py
tests/test_metering_reserve.py
tests/test_microbench.py
tests/test_nih_reporter.py
tests/test_nlp.py
tests/test_nsf.py
tests/test_ontology.py
tests/test_openaire.py
tests/test_openalex_local.py
tests/test_openfda.py
tests/test_opentargets.py
tests/test_pharmbloom.py
tests/test_pharmgkb.py
tests/test_pmc_fulltext.py
tests/test_predicate_polarity.py
tests/test_provenance.py
tests/test_remediation.py
tests/test_resilience.py
tests/test_resolution.py
tests/test_retractions.py
tests/test_reward.py
tests/test_scan.py
tests/test_scite.py
tests/test_scoring.py
tests/test_server.py
tests/test_snapshot.py
tests/test_sources_integration.py
tests/test_tool_specs.py
tests/test_ukri.py
tests/test_uncheckable.py
tests/test_usaspending.py
tests/test_variant_deep.py
tests/test_verify.py