AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
README.rst
setup.cfg
setup.py
docs/Makefile
docs/api.rst
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/dataset.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/release.rst
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staver/DIANN_quantification.py
staver/EDA.py
staver/HighCIPeptides.py
staver/MaxLFQ.py
staver/MissingValueHandler.py
staver/PeptideToProteinInference.py
staver/__init__.py
staver/batch_rename.py
staver/benchmark_model.py
staver/cli_download_pride_data.py
staver/data.py
staver/download_pride_data.py
staver/get_filename_size.py
staver/get_low_CI_peptides.py
staver/merge_data.py
staver/peptide_score_rank.py
staver/plots.py
staver/preprocessing.py
staver/protein_accumulation_plots.py
staver/protein_dynamic_range.py
staver/staver.py
staver/staver_pipeline.py
staver/utils.py
staver.egg-info/PKG-INFO
staver.egg-info/SOURCES.txt
staver.egg-info/dependency_links.txt
staver.egg-info/entry_points.txt
staver.egg-info/not-zip-safe
staver.egg-info/top_level.txt
tests/__init__.py
tests/test_joblib_load_file.py
tests/test_maxLFQ.py
tests/test_preprocessing.py
tests/test_read_proteomics_file.py
tests/test_rich.py
tests/test_rich_tabel.py
tests/test_staver.py
tests/test_staver_pipeline.py
tests/test_utils.py