LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
.tox/Cython/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/Cython/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/Cython/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/Cython/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/Cython/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/Cython/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/Cython/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/flake8/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/python3.10/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/python3.6/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/python3.7/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/python3.8/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Runtime/refnanny.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Utility/CConvert.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Utility/CpdefEnums.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Utility/CppConvert.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Utility/MemoryView.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Utility/TestCyUtilityLoader.pyx
.tox/python3.9/lib/python3.6/site-packages/Cython/Utility/TestCythonScope.pyx
img/rivindel_schema2.png
src/rivindel/__init__.py
src/rivindel/align.py
src/rivindel/assembler.c
src/rivindel/assembler.pyx
src/rivindel/bed.py
src/rivindel/report.py
src/rivindel/scan.py
src/rivindel/utils.py
src/rivindel/vcf.py
src/rivindel.egg-info/PKG-INFO
src/rivindel.egg-info/SOURCES.txt
src/rivindel.egg-info/dependency_links.txt
src/rivindel.egg-info/requires.txt
src/rivindel.egg-info/top_level.txt
test/__init__.py
test/test.bam
test/test.bam.bai
test/test.bed
test/test.vcf
test/test2.bam
test/test2.bam.bai
test/test_rivindel.py