Metadata-Version: 2.4
Name: xifdr
Version: 3.0.0a13
Summary: xiFDR: A tool for FDR analysis in cross-linking mass spectrometry
Author-email: "Falk B. Schimweg" <git@falk.schimweg.de>
License: AGPL-3.0-or-later
Project-URL: Homepage, https://github.com/Rappsilber-Laboratory/xiFDR-py
Project-URL: Documentation, https://xifdr-py.readthedocs.io
Project-URL: Repository, https://github.com/Rappsilber-Laboratory/xiFDR-py
Project-URL: Issues, https://github.com/Rappsilber-Laboratory/xiFDR-py/issues
Requires-Python: >=3.10
Description-Content-Type: text/x-rst
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: polars
Requires-Dist: scipy
Requires-Dist: psutil
Requires-Dist: pyarrow
Requires-Dist: setuptools_scm
Requires-Dist: kneed

xiFDR
=====

xiFDR is a tool for crosslink mass spectrometry (CLMS) false discovery rate (FDR) estimation
and crosslink spectrum match (CSM) aggregation. Usual applications are the extraction of residue links
or protein-protein interactions (PPIs) above a desired significance threshold.
Further, xiFDR supports *boosting* of FDR levels to obtain the largest possible number of residue-links
or PPIs by finding the optimal FDR thresholds.

Documentation
----------------------

Documentation can be found under https://xifdr-py.readthedocs.io/
