.gitattributes
.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
.github/workflows/release.yml
.github/workflows/tests.yml
demos/alignment.ipynb
demos/neuron_registration.ipynb
demos/statistics.ipynb
src/catan/__init__.py
src/catan/__main__.py
src/catan/_version.py
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src/catan/core/structures/__init__.py
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src/catan/core/structures/session.py
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src/catan/gui/__init__.py
src/catan/gui/app.py
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src/catan/gui/GUI_elements/main_menu.py
src/catan/gui/GUI_elements/main_window.py
src/catan/gui/GUI_elements/resource_monitor.py
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src/catan/gui/GUI_elements/fragments/FileReviewDialog.py
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src/catan/gui/GUI_elements/fragments/dialog_load_field.py
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src/catan/gui/GUI_elements/fragments/toggle_option.py
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src/catan/gui/background_tasks/TaskManager.py
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src/catan/gui/data/statistics/__init__.py
src/catan/gui/data/statistics/calculations.py
src/catan/gui/data/statistics/definitions.py
src/catan/gui/data/statistics/dimensions.py
src/catan/gui/data/statistics/engine.py
src/catan/gui/data/statistics/errors.py
src/catan/gui/data/statistics/plotdata_histogram.py
src/catan/gui/data/statistics/plotdata_scatter.py
src/catan/gui/data/statistics/plotdata_series.py
src/catan/gui/data/statistics/queries.py
src/catan/gui/data/statistics/registry.py
src/catan/gui/data/statistics/table.py
src/catan/gui/data/statistics/tabledata.py
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src/catan/gui/interaction/click_events.py
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src/catan/resources/__init__.py
src/catan/resources/load_config_defaults.json
src/catan/resources/curation_filters/__init__.py
src/catan/resources/curation_filters/default.json
src/catan/resources/load_configs/CaImAn.json
src/catan/resources/load_configs/catan_assignments.json
src/catan/resources/load_configs/catan_model.json
src/catan/resources/load_configs/catan_remap.json
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src/catan/tracking/__init__.py
src/catan/tracking/neuron_tracking.py
src/catan/tracking/neuron_tracking_analysis.py
src/catan/tracking/analytics/correlation_model.py
src/catan/tracking/analytics/distance_model.py
src/catan/tracking/analytics/fit_model_theoretical.py
src/catan/tracking/analytics/pairwise_distance.py
src/catan/tracking/analytics/pairwise_distance_blurred.py
src/catan/tracking/structures/__init__.py
src/catan/tracking/structures/assignments.py
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src/catan/tracking/utils_new/__init__.py
src/catan/tracking/utils_new/counts.py
src/catan/tracking/utils_new/footprint_correlation.py
src/catan/tracking/utils_new/general.py
src/catan/tracking/utils_new/plots.py
src/catan_toolbox.egg-info/PKG-INFO
src/catan_toolbox.egg-info/SOURCES.txt
src/catan_toolbox.egg-info/dependency_links.txt
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tests/test_core_smoke.py
tests/test_entrypoints.py
tests/test_gui_smoke.py
tests/test_imports.py
tests/test_resources.py
tests/test_version.py
tests/cli/test_cli.py