.gitignore
.readthedocs.yaml
README.rst
RattleSNP
rule_graph.dot
setup.py
RattleSNP.egg-info/PKG-INFO
RattleSNP.egg-info/SOURCES.txt
RattleSNP.egg-info/dependency_links.txt
RattleSNP.egg-info/entry_points.txt
RattleSNP.egg-info/not-zip-safe
RattleSNP.egg-info/requires.txt
RattleSNP.egg-info/top_level.txt
docs/Makefile
docs/requirements.txt
docs/source/ABOUT.rst
docs/source/Install.rst
docs/source/WORKFLOWS.rst
docs/source/click.rst
docs/source/conf.py
docs/source/index.rst
docs/source/_images/rattleSNP_logo.png
docs/source/_images/schema_pipeline_global-BUILD_STATS.png
docs/source/_images/schema_pipeline_global-FILTER.png
docs/source/_images/schema_pipeline_global-NOBUILD_STATS.png
docs/source/_images/schema_pipeline_global-SNPCALLING.png
docs/source/_images/schema_pipeline_global.png
docs/source/_static/logo.css
rattleSNP/VERSION
rattleSNP/__init__.py
rattleSNP/edit_files.py
rattleSNP/global_variable.py
rattleSNP/install.py
rattleSNP/main.py
rattleSNP/rattleSNP-complete.sh
rattleSNP/run.py
rattleSNP/snakemake_module.py
rattleSNP/usefull_function.py
rattleSNP/install_files/cluster_config_SLURM.yaml
rattleSNP/install_files/config.yaml
rattleSNP/install_files/tools_path.yaml
rattleSNP/scripts/__init__.py
rattleSNP/scripts/vcf2geno.py
rattleSNP/scripts/vcf2phylip.py
rattleSNP/snakefiles/Snakefile
rattleSNP/snakemake_scripts/rattleSNP_module.py
rattleSNP/snakemake_scripts/report.Rmd
rattleSNP/snakemake_scripts/report_vcf.Rmd