README.md
pyproject.toml
src/spatialcheckpoint/__init__.py
src/spatialcheckpoint/cli.py
src/spatialcheckpoint.egg-info/PKG-INFO
src/spatialcheckpoint.egg-info/SOURCES.txt
src/spatialcheckpoint.egg-info/dependency_links.txt
src/spatialcheckpoint.egg-info/entry_points.txt
src/spatialcheckpoint.egg-info/requires.txt
src/spatialcheckpoint.egg-info/top_level.txt
src/spatialcheckpoint/analysis/__init__.py
src/spatialcheckpoint/analysis/colocalization.py
src/spatialcheckpoint/analysis/domain_annotation.py
src/spatialcheckpoint/analysis/gradient.py
src/spatialcheckpoint/analysis/spatial_expression.py
src/spatialcheckpoint/analysis/spatial_features.py
src/spatialcheckpoint/configs/checkpoint_panel.yaml
src/spatialcheckpoint/configs/spatial_datasets.yaml
src/spatialcheckpoint/data/__init__.py
src/spatialcheckpoint/data/download.py
src/spatialcheckpoint/data/loader.py
src/spatialcheckpoint/data/preprocess.py
src/spatialcheckpoint/model/__init__.py
src/spatialcheckpoint/model/archetype_discovery.py
src/spatialcheckpoint/model/classifier.py
src/spatialcheckpoint/model/explainer.py
src/spatialcheckpoint/model/trainer.py
src/spatialcheckpoint/utils/__init__.py
src/spatialcheckpoint/utils/gene_sets.py
src/spatialcheckpoint/utils/metrics.py
src/spatialcheckpoint/validation/__init__.py
src/spatialcheckpoint/validation/bulk_mapping.py
src/spatialcheckpoint/validation/clinical_association.py
src/spatialcheckpoint/visualization/__init__.py
src/spatialcheckpoint/visualization/paper_figures.py
src/spatialcheckpoint/visualization/spatial_plots.py
tests/test_analysis.py
tests/test_data.py
tests/test_model.py