.python-version
MANIFEST.in
models/
results/
scripts/
uv.lock

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
*.pyc
.DS_Store
*.bak

# Distribution / packaging
build/
dist/
*.egg-info/
.installed.cfg
*.egg

# Unit test / coverage reports
.pytest_cache/
.coverage
htmlcov/

# Environments
.venv
venv/
.env

# Project-specific large data files
*.owl
*.parquet
*.pt
*.png
*.gif
*.csv
*.log

# Large data directories
output/
owl_files/
hf_models/
benchmark_results/
evaluation_results/
mteb_benchmarks/
ppi_yeast/
saved_models/
.ipynb_checkpoints/

# Jupyter Notebook
*.ipynb
