This folder contains

- demo2.sh, executable bash script after installing ete4 and TreeProfiler to create figure2 image.
- bac120_r202.nw, GTDB r202 bacteria tree in newick format. 
- bac120_metadata_r202.tar.gz, compressed gtdb bacteria metadata in tsv format, contains columns of gc_percentage, genome_size, ncbi_assembly_level, ncbi_genome_category and protein_count.
- progenome3.tar.gz, compressed proGenome3 metadata in tsv format, contains columns of aquatic_habitat, host_associated and soil_habitat.
