.coveragerc
.git_archival.txt
.gitattributes
.gitignore
.gitlab-ci.yml
.pylintrc
CHANGELOG.md
INSTALL.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
bin/bedtools
ngs_smap.egg-info/PKG-INFO
ngs_smap.egg-info/SOURCES.txt
ngs_smap.egg-info/dependency_links.txt
ngs_smap.egg-info/entry_points.txt
ngs_smap.egg-info/requires.txt
ngs_smap.egg-info/top_level.txt
smap/__init__.py
smap/__main__.py
smap/__version__.py
smap/compare.py
smap/delineate.py
smap/haplotype.py
smap/plotting.py
smap/relatedness.py
smap/design/SMAPdesign.py
smap/design/__main__.py
smap/design/design.py
smap/effect_prediction/__init__.py
smap/effect_prediction/__main__.py
smap/effect_prediction/editor.py
smap/effect_prediction/logging_configuration.py
smap/effect_prediction/models.py
smap/effect_prediction/plotting.py
smap/effect_prediction/utils.py
smap/effect_prediction/modifications/__init__.py
smap/effect_prediction/modifications/aggregate.py
smap/effect_prediction/modifications/annotate.py
smap/effect_prediction/modifications/collapse.py
smap/effect_prediction/modifications/discretize.py
smap/effect_prediction/modifications/modification.py
smap/haplotype_window/__init__.py
smap/haplotype_window/arguments.py
smap/haplotype_window/haplotype_window.py
smap/helper/__init__.py
smap/helper/timer_format.py
test/data.py
test/test_compare.py
test/test_delineate.py
test/test_haplotype.py
test/test_integration.py
test/effect_prediction/test_aggregation.py
test/effect_prediction/test_annotation.py
test/effect_prediction/test_collapse.py
test/effect_prediction/test_discritization.py
test/effect_prediction/test_editor.py
test/effect_prediction/test_logging.py
test/effect_prediction/test_main.py
test/effect_prediction/test_models.py
test/effect_prediction/test_plotting.py
test/effect_prediction/test_utils.py
test/effect_prediction/test_writing.py
test/haplotype_window/__init__.py
test/haplotype_window/sample_files.py
test/haplotype_window/test_window.py
utilities/SMAP_sliding-frames.py
utilities/SMAP_snp-seq.py
utilities/SMAP_target-selection.py