LICENSE
MANIFEST.in
README.md
pyproject.toml
cockatoo/__init__.py
cockatoo/cockatoo.py
cockatoo/config/template_coassemble.yaml
cockatoo/config/template_evaluate.yaml
cockatoo/workflow/coassemble.smk
cockatoo/workflow/evaluate.smk
cockatoo/workflow/env/aviary.yml
cockatoo/workflow/env/coverm.yml
cockatoo/workflow/env/prodigal.yml
cockatoo/workflow/env/r.yml
cockatoo/workflow/env/singlem.yml
cockatoo/workflow/scripts/aviary_commands.py
cockatoo/workflow/scripts/cluster_graph.py
cockatoo/workflow/scripts/collect_reference_bins.py
cockatoo/workflow/scripts/evaluate.py
cockatoo/workflow/scripts/query_processing.py
cockatoo/workflow/scripts/separate_SingleM_seq.py
cockatoo/workflow/scripts/single_assembly.py
cockatoo/workflow/scripts/summarise_coassemblies.py
cockatoo/workflow/scripts/target_elusive.py
cockatoo_genome.egg-info/PKG-INFO
cockatoo_genome.egg-info/SOURCES.txt
cockatoo_genome.egg-info/dependency_links.txt
cockatoo_genome.egg-info/entry_points.txt
cockatoo_genome.egg-info/requires.txt
cockatoo_genome.egg-info/top_level.txt
test/test_cluster_graph.py
test/test_coassemble.py
test/test_collect_reference_bins.py
test/test_evaluate.py
test/test_evaluate_script.py
test/test_iterate.py
test/test_query_processing.py
test/test_target_elusive.py
test/test_unmap.py