LICENSE
MANIFEST.in
README.rst
setup.py
tadacnv/__init__.py
tadacnv/annotate_cnvs.py
tadacnv/annotate_tads.py
tadacnv/classification_run.py
tadacnv/predict_variants.py
tadacnv.egg-info/PKG-INFO
tadacnv.egg-info/SOURCES.txt
tadacnv.egg-info/dependency_links.txt
tadacnv.egg-info/entry_points.txt
tadacnv.egg-info/requires.txt
tadacnv.egg-info/top_level.txt
tadacnv/data/Annotated_Default_TADs.p
tadacnv/data/CLINVAR_GRCh37.deletions.benign.sorted.autosomes.unique.no_overlap.bed
tadacnv/data/CLINVAR_GRCh37.deletions.pathogenic.likely_pathogenic.sorted.autosomes.unique.no_overlap.bed
tadacnv/data/CLINVAR_GRCh37.duplications.benign.sorted.autosomes.unique.no_overlap.bed
tadacnv/data/CLINVAR_GRCh37.duplications.pathogenic.likely_pathogenic.sorted.autosomes.unique.no_overlap.bed
tadacnv/data/DDG2P_genes.bed
tadacnv/data/Dixon_2015_stability_formatted_TADs.bed
tadacnv/data/H1_hESC_CTCF_peaks_idr_optimal.bed
tadacnv/data/HAVANA_exon.merged.bed.gz
tadacnv/data/config_del_clinvar.yml
tadacnv/data/config_del_default.yml
tadacnv/data/config_dup_clinvar.yml
tadacnv/data/config_dup_default.yml
tadacnv/data/config_example.yml
tadacnv/data/extracted_po_pairs.bed
tadacnv/data/fantom5_enhancer_phastcon_average.bed
tadacnv/data/gnomad_genes_pli_loeuf_HI.bed
tadacnv/data/merged_gnomad_DGV.DUP.no_overlap.size_matched.bed
tadacnv/data/merged_gnomad_eichler_biobank_DGV.DEL.no_overlap.size_matched.bed
tadacnv/data/rf_model_del.p
tadacnv/data/rf_model_dup.p
tadacnv/examples/__init__.py
tadacnv/examples/conservation_annotation.py
tadacnv/examples/generate_roc_and_calibration_curves.py
tadacnv/examples/plot_feature_dist.py
tadacnv/examples/visualize_annotated_cnvs.py
tadacnv/examples/visualize_annotated_tads.py
tadacnv/examples/visualize_results.py
tadacnv/lib/__init__.py
tadacnv/lib/bed.py
tadacnv/lib/bed_class.py
tadacnv/lib/classifier.py
tadacnv/lib/cnv.py
tadacnv/lib/gene.py
tadacnv/lib/plotting.py
tadacnv/lib/preprocessing.py
tadacnv/lib/tad.py
tadacnv/lib/utils.py
tests/__init__.py
tests/test.py
tests/test_1_tad_annotation.py
tests/test_2_cnv_annotation.py
tests/test_3_classification.py
tests/test_4_pathogenicity_prediction.py