.gitignore
Dockerfile
LICENSE
README.md
Snakefile
build.sh
publish.sh
run_snakemake_local.sh
run_snakemake_slurm.sh
setup.py
.github/workflows/docker-publish.yml
datasets/GSE126543/1_download.sh
datasets/GSE126543/2_map.sh
datasets/GSE126543/3_splicekit.sh
datasets/GSE126543/README.md
datasets/GSE126543/config.yaml
datasets/GSE126543/metadata.tsv
datasets/GSE126543/samples.tab
datasets/GSE126543/splicekit.config
datasets/GSE182150/1_download.sh
datasets/GSE182150/2_map.sh
datasets/GSE182150/3_splicekit.sh
datasets/GSE182150/README.md
datasets/GSE182150/config.yaml
datasets/GSE182150/metadata.csv
datasets/GSE182150/samples.tab
datasets/GSE182150/splicekit.config
datasets/GSE221868/1_download.sh
datasets/GSE221868/2_map.sh
datasets/GSE221868/3_splicekit.sh
datasets/GSE221868/README.md
datasets/GSE221868/config.yaml
datasets/GSE221868/metadata.csv
datasets/GSE221868/samples.tab
datasets/GSE221868/splicekit.config
datasets/PRJEB42763/1_download.sh
datasets/PRJEB42763/2_map.sh
datasets/PRJEB42763/3_splicekit.sh
datasets/PRJEB42763/README.md
datasets/PRJEB42763/Snakefile
datasets/PRJEB42763/config.yaml
datasets/PRJEB42763/metadata.csv
datasets/PRJEB42763/run_snakemake_local.sh
datasets/PRJEB42763/run_snakemake_slurm.sh
datasets/PRJEB42763/samples.tab
datasets/PRJEB42763/splicekit.config
docs/splicekit_docs.pdf
media/judge.png
media/motifs1.png
media/motifs2.png
media/splicekit_logo.png
media/splicekit_youtube.jpg
splicekit/__init__.py
splicekit/folders.setup
splicekit/splicekit.config.template
splicekit/version
splicekit.egg-info/PKG-INFO
splicekit.egg-info/SOURCES.txt
splicekit.egg-info/dependency_links.txt
splicekit.egg-info/entry_points.txt
splicekit.egg-info/not-zip-safe
splicekit.egg-info/requires.txt
splicekit.egg-info/top_level.txt
splicekit/clusterlogfc/__init__.py
splicekit/config/__init__.py
splicekit/core/__init__.py
splicekit/core/anchors.py
splicekit/core/annotation.py
splicekit/core/comps_dexseq.R
splicekit/core/comps_edgeR.R
splicekit/core/delta_dar.py
splicekit/core/exons.py
splicekit/core/features.py
splicekit/core/genes.py
splicekit/core/jbrowse2.py
splicekit/core/juan.py
splicekit/core/junctions.py
splicekit/core/motifs.py
splicekit/core/patterns.py
splicekit/core/promisc.py
splicekit/core/report.py
splicekit/judge/__init__.py
splicekit/june/__init__.py
splicekit/report/__init__.py