.gitignore
.readthedocs.yaml
ACTION_PLAN.md
LICENSE
README.ipynb
README.md
cython_constraint.txt
pyproject.toml
requirements.txt
setup.cfg
.github/workflows/tests.yaml
docs/changelog.rst
docs/citation.rst
docs/conf.py
docs/index.rst
docs/installation.rst
docs/quickstart.rst
docs/theory.rst
docs/userguide.rst
notebook/GL.png
notebook/README.ipynb
notebook/environment.yml
notebook/simGL.ipynb
notebook/renv/.gitignore
notebook/renv/activate.R
notebook/renv/settings.dcf
requirements/docs.txt
requirements/minimal.txt
requirements/test.txt
simGL/__init__.py
simGL/simGL.py
simGL.egg-info/PKG-INFO
simGL.egg-info/SOURCES.txt
simGL.egg-info/dependency_links.txt
simGL.egg-info/requires.txt
simGL.egg-info/top_level.txt
tests/conftest.py
tests/test_GL_to_Mm.py
tests/test_GL_to_vcf.py
tests/test_allelereadcounts_to_GL.py
tests/test_allelereadcounts_to_pileup.py
tests/test_incorporate_monomorphic.py
tests/test_normalize_GL.py
tests/test_ref_alt_to_index.py
tests/test_sim_allelereadcounts.py
tests/test_subset_GL.py